PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RQH3E | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 428aa MW: 47922.7 Da PI: 9.0369 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT +E++++++a k++G W++I +++g ++t+ q++s+ qk+ Aradu.RQH3E 60 RERWTDDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.07E-16 | 54 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.492 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 6.9E-17 | 58 | 107 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-12 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 60 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 60 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.11E-9 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MAVQDQSGVA RLQGGLTVGN EVSFVSRAYS VPHVQLNDQF SCGNDYSPKV RKPYTITKQR 60 ERWTDDEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR DSSGNPTSLV 120 EPIEIPPPRP KRKPMHPYPR KLVEIPKREI SNLEHSVRSN SPKSADVDQE NKSPKSVLSA 180 IVSDTLGSSD SDTLAGSLSP VSSMSGGNTS NSALAEPKSS FEEDRSTPLV GLNANSAQHE 240 HPLVKLELSH NESVSTKDDV AEESSSRTLK LFGTTLLLTD TCTPINEVSK PVPINTMHLM 300 QLQSRNSDAT KDPATVVAPW WILSHNRPFI PLHKQPEEKN RDSDLGEFET KEVQKEPSWS 360 GSNTSSVSDE ENTAKSKEQG MSRIRVRPRT FGKGFVPYKR CMAEREKNHY YSTMTCEKTE 420 EQRIKLSL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RQH3E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208667 | 0.0 | KF208667.1 Arachis hypogaea putative MYB-related protein 13 (MYB13) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015931660.1 | 0.0 | protein REVEILLE 1-like | ||||
Refseq | XP_015947535.1 | 0.0 | protein REVEILLE 1-like | ||||
Refseq | XP_025609480.1 | 0.0 | protein REVEILLE 1 | ||||
TrEMBL | V5T8I4 | 0.0 | V5T8I4_ARAHY; Putative MYB-related protein 13 | ||||
STRING | GLYMA14G39130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 9e-52 | MYB_related family protein |