PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.R7CC6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 156aa MW: 17944.1 Da PI: 7.7385 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.3 | 1.5e-19 | 63 | 116 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Aradu.R7CC6 63 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 116 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 135 | 2.6e-43 | 62 | 154 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk ++++L++++++L++++++ Aradu.R7CC6 62 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQVHT 154 69**************************************************************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-20 | 52 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.75 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-18 | 61 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.00E-16 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 63 | 116 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 65 | 125 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-6 | 89 | 98 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-6 | 98 | 114 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.2E-16 | 118 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MKRTGSSSDS LGPLMTICPS STEEQSPRSN HVYGHDPLFQ SMVLDGLDEE GCTVEESGHH 60 SEKKRRLSVE QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL 120 ERDYGVLKNN YDALKVNHDA LKQDNDALHK QVHTTH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.R7CC6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025622702.1 | 1e-108 | homeobox-leucine zipper protein ATHB-6 | ||||
Swissprot | Q940J1 | 2e-57 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A445B972 | 1e-107 | A0A445B972_ARAHY; Uncharacterized protein | ||||
STRING | XP_004288161.1 | 2e-79 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 7e-60 | homeobox protein 16 |
Publications ? help Back to Top | |||
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