PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QXB0J
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YC
Protein Properties Length: 306aa    MW: 33795.5 Da    PI: 6.1522
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QXB0JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.51.7e-196861898
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                 ++++P arikki+++dedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+    ++ +v++ ++fdfl div +
  Aradu.QXB0J  6 DTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCNRTYSITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIVSK 86
                 5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-26272IPR009072Histone-fold
SuperFamilySSF471132.0E-20390IPR009072Histone-fold
PfamPF008081.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQT DEDVGKIALA VPVLVSKALE LFLQDLCNRT YSITLQRGAK  60
TMTSLHLKHC VQSYNVFDFL RDIVSKVPDY GHGHGHGHSH SEGGVDDRTL PKRRKAGGDD  120
CNDSDEEAKR SKMYELGHSG GTGRGRGRGR GRGRGRGART AEREAHHHQQ VESEPCSSVQ  180
HPSKDIPNTG MSLDNSPESK EVPKENTACH EENNQSLRNI DLNANLNESE EKNTSMEAPA  240
SLPPATLPPS SLPELATEIN HEEIPGWSLS DADKMAIDTM QLANLGSRID DDEDYDEEGR  300
ISLWGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145155RGRGRGRGRGR
2147156RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QXB0J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946986.10.0dr1-associated corepressor homolog
RefseqXP_025624793.10.0dr1-associated corepressor homolog
TrEMBLA0A445B1F50.0A0A445B1F5_ARAHY; Uncharacterized protein
STRINGGLYMA06G46850.11e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-67nuclear factor Y, subunit C11