PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QVJ1Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 316aa    MW: 36672.1 Da    PI: 6.9574
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QVJ1YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.7e-109514990
         FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                 +++r+++aetr+gC+a++ v+  + +g+w ++ ++  HnHe+ 
  Aradu.QVJ1Y  9 RRKREPKAETRCGCEAEMCVHVPSeSGRWIISYFQDVHNHEML 51
                 57899*****************999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-7951IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.113161197IPR007527Zinc finger, SWIM-type
SMARTSM005750.0086172199IPR006564Zinc finger, PMZ-type
PfamPF044349.5E-5173196IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGSVNDGMRR KREPKAETRC GCEAEMCVHV PSESGRWIIS YFQDVHNHEM LDDRLTFMLP  60
GHRKMDAAAL EQMNMMLREK DVGNFFGGFR TTSRYEGLHS MLGKFMQSRH NLRDFVEQFM  120
RCISQMRSRE AHFDLLSMVG EPVLQSPFHD LERSANARRE WQVCHYSDSN SFKCSCLRME  180
SFGIPCDHIV AVLVHLEMTN IPDSLVLDRW SKSARSKVRT FVEKGLFCWD STITCRNWML  240
NDLCREMCVL ACRHEAEIMD MTDKVLHEIA RLKEIQDSGD VVGLNEVGEA STLEGYVRDP  300
QLVRCQKRER KETVKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QVJ1Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025702549.11e-143protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444WRS71e-145A0A444WRS7_ARAHY; Uncharacterized protein
TrEMBLA0A444WRS81e-145A0A444WRS8_ARAHY; Uncharacterized protein
TrEMBLA0A444WRT01e-146A0A444WRT0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-06FAR1-related sequence 10