PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.QT9FH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 316aa MW: 34238.3 Da PI: 6.3078

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.QT9FH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.8e-39	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfp ++p++fa+vh++FGasn+ k+l++l++ +reda++sl++eAear++ PvyG+v++i lqq+l+q + +l ++k Aradu.QT9FH 7 PCAACKFLRRKCTQECIFAPYFPPDNPQRFACVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLHQIQMDLLHAK 104 7*******************************************************************************************999888 PP DUF260 99 ee 100 +e Aradu.QT9FH 105 SE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.312	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.7E-39	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSSTNSPCAA CKFLRRKCTQ ECIFAPYFPP DNPQRFACVH RVFGASNIGK ILNDLSPCQR 60 EDAVTSLAFE AEARLDSPVY GCVRHIVILQ QRLHQIQMDL LHAKSELSAY INPQGIQGPF 120 SPHGIRGLPL YPQGKPPSSS AALFGPPYGP NVIQSLMPPS SVQHNGPMNA NADLNPEQRE 180 LLEQQHDMMV RNYEQQQQEY LRYNAATGIE PVAAGSPVSV VTADGDGRGN GVFAQMAAHS 240 GGQGGELTPC LGLGTFDSGG TYHHQLQQEP PQHGGVGENY VGLANRHHYP VEAQFLLPSQ 300 QQPSESEDCK SVGPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	6	110	10	114	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	6	110	10	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.QT9FH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960280.2	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-55	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A445EXF9	0.0	A0A445EXF9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23337	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-58	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]