PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QQB0D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 435aa    MW: 47468.6 Da    PI: 7.6301
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QQB0DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08112132526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ + G C++G+rCkF H+
  Aradu.QQB0D 112 VCNYWIQ-GNCNFGERCKFLHS 132
                  6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.1222147IPR000571Zinc finger, CCCH-type
SMARTSM003560.462146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.04E-6108132IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-7111131IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5112132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.9E-19132240IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.3E-5138177IPR001680WD40 repeat
SuperFamilySSF509781.1E-50139428IPR017986WD40-repeat-containing domain
PfamPF004001.9E-4142177IPR001680WD40 repeat
PROSITE profilePS5029423.308145347IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.986145186IPR001680WD40 repeat
PRINTSPR003201.3E-6164178IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
SMARTSM003200.46217254IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.5E-35241433IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-4261298IPR001680WD40 repeat
PfamPF004000.0018265298IPR001680WD40 repeat
PROSITE profilePS5008213.182268307IPR001680WD40 repeat
PRINTSPR003201.3E-6285299IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780285299IPR019775WD40 repeat, conserved site
SMARTSM003205.0E-4301338IPR001680WD40 repeat
PfamPF004000.005303337IPR001680WD40 repeat
PRINTSPR003201.3E-6325339IPR020472G-protein beta WD-40 repeat
SMARTSM003204342385IPR001680WD40 repeat
SMARTSM003201.6388425IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDLDGGNKRV YQRLGGPSGD SKHQKVCYHW QAGKCNRHPC PFLHSELPTP NVNGTSSKRP  60
HGSADNSGFS GHRRNPHFNN TWGRGGGRGG GRGAGGGVVG GDMSVVRKAD KVCNYWIQGN  120
CNFGERCKFL HSWNTGDGFS MLTQLEGHQK VVSGIAFPSG SDKLYTGSTD ESVRVWDCQS  180
GKCVAVINLG GEVGCMISEG PWVFVGIPNF VKVWNTQNSM ELSLNGPVGQ VYALVVNNDM  240
LFAGTQDGSI LVWKFNVVAN CFEPAASLKG HTRGVVSLVV GANRLYSGSM DNTIRVWNLE  300
NLECLQTLTD HTSVVMSVLC WEQFLLSCSL DKTVKVWYAT ESGNLEVTYT HNEEHGIVTL  360
CGMHDAHGKP ILLCSCNDNT VRFYDLPSFA ERGKIFTKQE VRAIQAGPNG LFFTGDGTGQ  420
VKVWNWTPEP IPTIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-231334358323Tako8
6g6n_A5e-231334358323Tako8
6g6n_B5e-231334358323Tako8
6g6n_C5e-231334358323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391RGGGRGGGR
28392RGGGRGGGRG
38996GGRGAGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QQB0D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967505.10.0zinc finger CCCH domain-containing protein 48 isoform X1
RefseqXP_025701899.10.0zinc finger CCCH domain-containing protein 48 isoform X1
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A445CZK50.0A0A445CZK5_ARAHY; Uncharacterized protein
STRINGXP_004513686.10.0(Cicer arietinum)
STRINGXP_007152351.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74463343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1