PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QIJ2V
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 376aa    MW: 41827.9 Da    PI: 4.4937
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QIJ2VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.6e-16211247135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cgt +  Tp +Rrgp+g+++LCnaCGl+++ kg+
  Aradu.QIJ2V 211 CQHCGTGEksTPAMRRGPSGPRSLCNACGLMWANKGT 247
                  ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.6E-769104IPR010399Tify domain
PROSITE profilePS5132013.09969104IPR010399Tify domain
PfamPF062002.3E-1071103IPR010399Tify domain
PfamPF062036.6E-15140181IPR010402CCT domain
PROSITE profilePS5101712.64140182IPR010402CCT domain
SMARTSM004012.3E-13205258IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.288205262IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-12207258No hitNo description
Gene3DG3DSA:3.30.50.105.0E-15209252IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.23E-15210253No hitNo description
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
PfamPF003208.7E-14211247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDTANQQRLQ ARTFDDDDDD EAQPQQQQQQ KTVLVPMQVN GALNPFDGGS HEVEEAFVSS  60
GLSSTATSVQ PRTSELTIAF EGEVYVFPAV TPEKVQAVLL LLGAQEMPRI AASSDSSLQQ  120
NCQQIMGIND ASRGSKVSRR IESLVRFREK RKDRCFEKKI RYTCRKEVAQ RMHRKNGQFA  180
SLKEGYKSPA ENFDSSNGGG DTYSQSIERR CQHCGTGEKS TPAMRRGPSG PRSLCNACGL  240
MWANKGTLRD LSKASRITFE QNGQDTSADI KPSPTEPENS SPDQNEDICL EEAKPVPIDS  300
RQSPERNNDQ YTVDTAEAVT NDSSIQMENN ALSIHQEDNK LEDFADASGT EFDIPACFDE  360
QVDIDIDDSN MRTYWL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QIJ2V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943567.10.0GATA transcription factor 24 isoform X1
RefseqXP_025622252.10.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL72e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445BAN90.0A0A445BAN9_ARAHY; Uncharacterized protein
STRINGGLYMA08G07170.11e-162(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-66ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]