PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Q3VNF
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 131aa    MW: 14990.2 Da    PI: 6.7852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Q3VNFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-2029962999
                 -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 + + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el+++++r+
  Aradu.Q3VNF 29 Q-RPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRLGIRRA 96
                 3.34679************************************************..3489999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.42197IPR003340B3 DNA binding domain
SMARTSM010194.6E-6697IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-2324101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-252498IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-172696IPR003340B3 DNA binding domain
CDDcd100171.91E-143095No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MCLLLNEAPL LVDADGEEDD TEAVDYSQQR PSQELVAKDL HGLEWRFRHI YRGQPRRHLL  60
TTGWSAFVNK KKLVSGDAVL FLRGDDGELR LGIRRAAQLK NGLTTLLLRD SFLSSFLMAS  120
VQFMLCIKQE W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-3218121147250Auxin response factor 1
4ldy_B3e-3218121147250Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Q3VNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025682337.12e-52auxin response factor 3
SwissprotQ8S9859e-47ARFO_ORYSJ; Auxin response factor 15
TrEMBLA0A444WYR34e-51A0A444WYR3_ARAHY; Auxin response factor
STRINGEOY281438e-48(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15884610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.12e-45ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]