PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.PG18F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 270aa    MW: 31645.6 Da    PI: 10.4327
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.PG18FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-14371141598
                  -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +  +p+kf++++gg+ +++  ++l  ++g +W++    ++++g++++ kGWkeF+    L+ g ++ F+++g+s+   +v +f+
  Aradu.PG18F  37 LQKMPNKFCRKYGGDMPNP--VKLLPPDGTEWRIDW--TNRDGEILFDKGWKEFATFYTLENGHVLWFEYNGTSNI--KVNIFD 114
                  5578********9998777..***************..*******************************9986555..888886 PP
2B340.74.4e-131912681899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  lp  f++ + ++++   +  +     ++W  +li+  +++  +++  W+ Fv++n+Lk+gD+++F+l++r++ el+v+++r+
  Aradu.PG18F 191 LPVCFFRMYFENTK---QYAILRVGKKQWHATLIHYPNRKNALIS-HWRLFVEENNLKAGDVCIFELVNRQGPELKVHIRRS 268
                  66667777754432...355666778*******998887776555.9*********************99999******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.75E-918114No hitNo description
PROSITE profilePS5086311.51923116IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1725115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-1726116IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-527116IPR003340B3 DNA binding domain
PfamPF023625.7E-1237114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-19167268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-16168268IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-9175269IPR003340B3 DNA binding domain
PfamPF023626.1E-11191268IPR003340B3 DNA binding domain
CDDcd100175.91E-11191267No hitNo description
PROSITE profilePS5086310.278214269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDSSNFQRNK NSLSTVIRFF KIVLRKIWLP TTVSLALQKM PNKFCRKYGG DMPNPVKLLP  60
PDGTEWRIDW TNRDGEILFD KGWKEFATFY TLENGHVLWF EYNGTSNIKV NIFDMTALEI  120
DYPSNGRIGD DNSVEILDEP PPRRDRGRPK KKVIAEPKQS LVREAKKFKS KNPSFVIKIK  180
QKHQTGLPAN LPVCFFRMYF ENTKQYAILR VGKKQWHATL IHYPNRKNAL ISHWRLFVEE  240
NNLKAGDVCI FELVNRQGPE LKVHIRRSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.PG18F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029145167.11e-172B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A445B0X91e-149A0A445B0X9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-19B3 family protein