PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.NZZ6W | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 456aa MW: 49760.4 Da PI: 7.6516 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.5e-07 | 221 | 243 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Aradu.NZZ6W 221 HYCSVCGKGFKRDANLRMHMRAH 243 68*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.89E-6 | 219 | 246 | No hit | No description |
PROSITE profile | PS50157 | 12.736 | 221 | 248 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0022 | 221 | 243 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.7E-7 | 221 | 277 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 223 | 243 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 273 | 306 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 23 | 311 | 333 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MISTSIEQNQ GLMMQMFPTP PPGSEDLVSQ QSMEIVNNSS VGSSSSSTAA AAASSSSHSS 60 SLLFNLSVLK DKLNQVQTLV GVILSPDQNL QDSTTSMAVS SMNSTIQEII PPPPPPPPPG 120 TIATTVAFAN NHHELHQQQH QRLLINNNNN NLRGFFSSTT DSEALDNWLG ESYNNTGGVD 180 CKVNNNDDDD PSVEISDSKE GAKKLDIIEL DAADLLAKYT HYCSVCGKGF KRDANLRMHM 240 RAHGDEYKTS AALSNPLKQN NNGENGDCLP KKYSCPQEGC RWNQKHAKFQ PLKSMICAKN 300 HYKRSHCPKM YVCKRCNQKQ FSVLSDLRTH EKHCGDLKWQ CSCGTTFSRK DKLMGHVALF 360 VGHRALSIAF HQYNRLIAPI VSTLTHGLML KEVALLIVVE SFITNAGFWI HWIWRPKCGK 420 FGSCCSASGL VAAAAGLVGL CDAHGGLNGV AADDLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.NZZ6W |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935812.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
Swissprot | Q0WT24 | 6e-99 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A445BW57 | 0.0 | A0A445BW57_ARAHY; Uncharacterized protein | ||||
STRING | XP_007150139.1 | 1e-136 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8099 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 5e-88 | C2H2 family protein |