PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N7IXY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 671aa    MW: 74338.4 Da    PI: 5.8367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N7IXYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4432.1e-1353076701374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lLl+cAeav++++  la+++L++l+  ++p gd+mqR+a++fte L arla  s+s+ ++  p+s+ +++ns e l+++++ ++++P++kf+h+t
  Aradu.N7IXY 307 LVHLLLACAEAVAKEEYMLARRYLQHLNRVVTPLGDSMQRVASCFTESLTARLATtSTSNNANPTPSSTFPHSNSMEILKIYQIVYQACPYIKFAHFT 404
                  68****************************************************97777888888999999999************************ PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  aNqaI ea+egeervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef++ v ++le+l++++++
  Aradu.N7IXY 405 ANQAIFEAFEGEERVHVIDLDILQGYQWPAFMQALAARSSGAPFLRITGVGP----SIESVKETGRCLTELAHSLRIPFEFHP-VGEQLENLKPHMFN 497
                  ****************************************************....9**************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                   + gEalaVn v qlhr++    +l     ++L ++++  P +v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++e
  Aradu.N7IXY 498 RRVGEALAVNTVNQLHRVP--GNALG----NLLTMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPE 589
                  ******************9..34444....6******************************************************************* PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n+vaceg+er+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Aradu.N7IXY 590 IRNIVACEGQERVERHERLEKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWR 670
                  ********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.535281650IPR005202Transcription factor GRAS
PfamPF035147.3E-133307670IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MINSLCGSSV SLKSENSSTK LQPTSSNDSV LQSNKKNNAT QSSVDLLEQN NNSTLTPPSL  60
NLPGLKFDLD GDVEVQSPDS SMWESFFSDQ LDTDFMMCSP VRNVPSPQQA STYNCNYNYA  120
HSMQAQSFSG CSPPRFLAQI GAYNSSGGGG GGKGKGLSPL HRVFNSPNNQ YMQHVENLSL  180
PAIEEFLEEF QQGEYSSITA ANNSSKVGDG SDIVGSSSEC FELGNLIPSA SEESSVQENE  240
IYHHMGSMVS ASLSQALQQE RYHEKQQKQQ VQQQQQHPHS HQHHQNLMVP IPLGLEQVVE  300
QESGLQLVHL LLACAEAVAK EEYMLARRYL QHLNRVVTPL GDSMQRVASC FTESLTARLA  360
TTSTSNNANP TPSSTFPHSN SMEILKIYQI VYQACPYIKF AHFTANQAIF EAFEGEERVH  420
VIDLDILQGY QWPAFMQALA ARSSGAPFLR ITGVGPSIES VKETGRCLTE LAHSLRIPFE  480
FHPVGEQLEN LKPHMFNRRV GEALAVNTVN QLHRVPGNAL GNLLTMIRDQ APSIVTLVEQ  540
EASHNGPYFL GRFLEALHYY SAIFDSLDAT FPPESAQRAK VEQYIFAPEI RNIVACEGQE  600
RVERHERLEK WRKIMEGKGF KGVPLSPNAV TQSKILLGLY SCDGYRLTED KGCLLLGWQD  660
RAIIAASAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-9931466926378Protein SCARECROW
5b3h_A1e-9931466925377Protein SCARECROW
5b3h_D1e-9931466925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N7IXY
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025605993.10.0scarecrow-like protein 23 isoform X1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A445CTW90.0A0A445CTW9_ARAHY; Uncharacterized protein
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]