PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.N6FMH
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Trihelix
Protein Properties Length: 460aa    MW: 52992.8 Da    PI: 7.6271
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.N6FMHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.21.8e-1221683786
     trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 k+ e g++rs+k+Ckek+en+ k++k++keg+ ++++++  t+++fdql+
  Aradu.N6FMH 21 KLGEIGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYKFFDQLQ 68
                 67899****************************975544..6******98 PP
2trihelix101.95.1e-32280365187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r+++++++ ++  k+plWe++s  m++ g++rs+k+Ckekwen+nk++kk+ke++k+r  e+s+tcpyf++lea
  Aradu.N6FMH 280 RWPKGEVHALIRLRTSLDSKYMENGPKAPLWEDISGGMQRLGYNRSAKRCKEKWENINKYFKKVKESNKQR-REDSKTCPYFHELEA 365
                  8*********************************************************************8.78999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.984142IPR017877Myb-like domain
PfamPF138376.8E-72170No hitNo description
CDDcd122031.10E-25279344No hitNo description
PROSITE profilePS500906.946279337IPR017877Myb-like domain
PfamPF138376.9E-22279366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSFGGNRWPR QETLALLKIR KLGEIGYKRS AKKCKEKFEN VYKYHKRTKE GRTGKSEGKT  60
YKFFDQLQAL ENHNQFNTHP PPKSSQPLLP ANPTLVYSSI LPSTTVTAAT TNNISSTTFA  120
PHSFPNNNSM NLFSSPSSSP TSPSSSTASD EGLEERYKKK RKWKDYFRKL TRQVLAKQEE  180
MQNRFLEAID RRERERVAQE EAWRLQEMSR IANEHDVLVQ ERSTAAAKDA AVIALLHKLS  240
GHETQSPQTQ IQIQKQETIK AKNSSSSEIV ERMSCSSSSR WPKGEVHALI RLRTSLDSKY  300
MENGPKAPLW EDISGGMQRL GYNRSAKRCK EKWENINKYF KKVKESNKQR REDSKTCPYF  360
HELEALYKDK ISNNNNNTFG SFQNNMEPLM VQPEQQWRPP PEPNKDNNNA SNEEEEEEYD  420
DDGVEEEEEE EEGDSVGEEE EGLNRYQIVT NKVSSVDTVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12735KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.N6FMH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967999.10.0trihelix transcription factor GT-2
SwissprotQ391171e-119TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A445CYR40.0A0A445CYR4_ARAHY; Uncharacterized protein
STRINGGLYMA16G28240.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.23e-54Trihelix family protein