PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.MS5Z0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 233aa MW: 27384.9 Da PI: 4.921 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.5 | 1.6e-11 | 63 | 121 | 1 | 59 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetr 59 +fYn+YA++ GFs rk++++ks r g + ++fvC +eg+r +++ + +r++++etr Aradu.MS5Z0 63 EFYNRYARTRGFSARKNRTRKS-RAGALKLKNFVCHREGFRPPNNYGiGNLKRKPTPETR 121 6*******************99.7777**************9988775445555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-8 | 63 | 119 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRKLTWIYMD EDDTNVEPMF DYHGFDEGYN IDSLEDIGMI EFWNIRDEDV CHFDFSDVDI 60 AFEFYNRYAR TRGFSARKNR TRKSRAGALK LKNFVCHREG FRPPNNYGIG NLKRKPTPET 120 RWKEVQADLA SVNGRPSMQT CFQQLERSDA NVYTLSIFHM FQPIFVRAAS MKWWTLVAFE 180 PTASMMLTES QVAVAAYIFS DTLDPFEELV ISDEKDYRST FRCLVPERCV ESE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.MS5Z0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937958.2 | 8e-84 | uncharacterized protein LOC107463640 | ||||
TrEMBL | A0A444XSA5 | 2e-73 | A0A444XSA5_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445CDK2 | 1e-74 | A0A445CDK2_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 8e-08 | FAR1-related sequence 10 |