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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.MF3XQ | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | ARF | ||||||||
| Protein Properties | Length: 941aa MW: 103869 Da PI: 5.6059 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 71.5 | 1.1e-22 | 171 | 269 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
f+k+lt sd++++g +++p++ ae+ +++++ +l+++d++ ++W++++iy ++++r++lt+GW+ Fv +++L++gD+v+F ++++ +l+v
Aradu.MF3XQ 171 FCKTLTASDTSTHGGFSVPRRAAEKLfpPLPPTQ--ELVVRDLHDNTWTFRHIYrgGGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLRV 264
99*********************99998777766..8*****************66667777*************************..4577778** PP
EEE-S CS
B3 95 kvfrk 99
+v+r
Aradu.MF3XQ 265 GVRRV 269
**985 PP
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| 2 | Auxin_resp | 113.8 | 1.6e-37 | 294 | 377 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaas++ +F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+++
Aradu.MF3XQ 294 AAHAASNRIPFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNIQ 377
79**********************************9********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 4.32E-43 | 159 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 7.7E-37 | 164 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.83E-22 | 170 | 268 | No hit | No description |
| SMART | SM01019 | 1.6E-24 | 171 | 270 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.8E-20 | 171 | 269 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.943 | 171 | 270 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 3.0E-32 | 294 | 377 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 7.4E-11 | 832 | 922 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 23.746 | 835 | 919 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 5.3E-8 | 839 | 914 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 941 aa Download sequence Send to blast |
MDHGCCSSIS ISVGMKLIES GAALMASLEE KVKTCGVGVV GGQTLVAEMK LLKEMQEHSG 60 VRKTLNSELW HACAGPLVSL PQVGSLVYYF PQGHSEQVAA STRRTATSQI PNYPNLPSQL 120 LCQVQNVTLH ADKDTDEIYA QMSLQPLNSE KDVFPISDFG LKHSKHPTEF FCKTLTASDT 180 STHGGFSVPR RAAEKLFPPL PPTQELVVRD LHDNTWTFRH IYRGGGQPKR HLLTTGWSLF 240 VGSKRLRAGD SVLFIRDEKS QLRVGVRRVN RQQTTLPSSV LSADSMHIGV LAAAAHAASN 300 RIPFTIFYNP RACPSEFVIP LAKYRKSVYG TQLSVGMRFG MMFETEESGK RRYMGTIVGI 360 SDLDPLRWPG SKWRNIQVEW DEPGCGDKQN RVSVWEIETP ESLFIFPSLT SSLKRPLQSG 420 FLENDWGALI RRPYIRVPEN GATELANSMP NIYSEHLMKM LLKPQLINNN GAMAMQQESV 480 AMRGTLQDAK TTQAPENHKV NLASTENLPL KNLYSQSVPE QANVVNLHSQ AKNDNHMSSG 540 TVIDKPKLEP EVLNDQMYEI PSGGTGTNIE KVASNPANSQ SVANQLAFLN QNQSHPLAQS 600 GSWPIQPQLE SSVSHPQLVD MPQGDSAIAN SMLPQLDIDE WMVYSSNQTF ANQNRSTGPV 660 SDFQEHSAAL QPQVVNPSMP MNQEVWDQYV KNFKLLSQVD QMTSVCQPGM YSLNGISSSN 720 NLRDLSAESN NQSEICVDVS NSVNTTMVDP STSSTILDEY CTLKERDFQN PQDCIVGNLS 780 SSQDVQSQIT SASLTESHAF PLQDNSGGTS SSHVDFDESS FLQNNSWQPV AAPVRTYTKV 840 QKAGSVGRSI DVTTFKNYEE LIRAIECMFG LDGLLNDTKG SGWKLVYVDY ESDVLLVGDD 900 PWEEFVGCVR CIRILSPSEV QQMSEEGMKL LNSGALQGIN V |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 24 | 402 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.MF3XQ |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015969856.2 | 0.0 | auxin response factor 5 isoform X1 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A445CJX1 | 0.0 | A0A445CJX1_ARAHY; Auxin response factor | ||||
| STRING | GLYMA14G40540.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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