PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.M9GL4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 35334.8 Da PI: 7.9825 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177 | 5e-55 | 12 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+v+yL++++++k++++ +vi+evdiyk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s +++ Aradu.M9GL4 12 LPPGFRFHPTDEELIVHYLCNQATSKPCPA-SVIPEVDIYKFDPWELPDKTSFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-GSK 107 79****************************.99***************888899****************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfykgr pkg ktdW+mheyrl Aradu.M9GL4 108 HVGVKKALVFYKGRPPKGIKTDWIMHEYRL 137 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-66 | 10 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.097 | 12 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEGSRRSSNS ELPPGFRFHP TDEELIVHYL CNQATSKPCP ASVIPEVDIY KFDPWELPDK 60 TSFGENEWYF FSPRDRKYPN GVRPNRATVS GYWKATGTDK AIYSGSKHVG VKKALVFYKG 120 RPPKGIKTDW IMHEYRLVGS RRQPTKQIGS MRLDDWVLCR IYKKRSIAKS MLEPKEEFPT 180 MPQINHHLTS SSNDGNDNND DEQEMMMKFP RTCSLTHLLE MDYLGPISQI LSDGSYNSTF 240 DFQLNSANVG NMIMDPFVKQ PQILEIPNKN NPNNPYYDVD SGKNNLVKQN STINPTIFVN 300 QFFDHSGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-74 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-74 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-74 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-74 | 12 | 169 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-74 | 12 | 169 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-74 | 12 | 169 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-74 | 12 | 169 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.M9GL4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965541.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
Refseq | XP_025700165.1 | 0.0 | NAC transcription factor 29 isoform X1 | ||||
Swissprot | K4BNG7 | 1e-116 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A445D6H4 | 0.0 | A0A445D6H4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G12220.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-116 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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