PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LI4HP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 556aa    MW: 61484.1 Da    PI: 4.8276
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LI4HPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23128228299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+++a+         + ++ +   l+++d++g +We+++iyr++++r+++t+GW++Fv+++++ +gD+vvF+  ++s++++
  Aradu.LI4HP 128 AKILTRSDANNGGGFSVPRSCADLVfpplnfeEDPPVQ--NLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSDGRM 221
                  599*******************777*****96556556..6************************************************..7799*** PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  Aradu.LI4HP 222 FVGLRRN 228
                  ****986 PP
2Auxin_resp713.5e-24282367183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+P++++ eFvvk+e+v   ++ +++ vGmR+km  e+ dss+  + +Gtv+gv+   +   W++S+Wr+L+
  Aradu.LI4HP 282 AMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVMINgIPWRVGMRVKMGRENYDSSRMDWfQGTVSGVTVPgKDQPWSGSPWRMLQ 367
                  678899******************************9*******************************97425568********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-30123229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-26123233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-18126227No hitNo description
PROSITE profilePS5086312.605127229IPR003340B3 DNA binding domain
SMARTSM010193.0E-17127229IPR003340B3 DNA binding domain
PfamPF023621.3E-20128228IPR003340B3 DNA binding domain
PfamPF065072.8E-21282367IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MPRRSAPSSS LPPRPTPIPA KFWRACAGIS AKAPVVNSRV YYFPQGHIDQ AASQPRNLSP  60
LVYSRPVIPC RVAAVNYFAD PNTDEVFLKI LLVPVTDGSA QDFLPPAVAA EGNSGNGNGD  120
DEEVASYAKI LTRSDANNGG GFSVPRSCAD LVFPPLNFEE DPPVQNLRIT DLHGAVWEFR  180
HIYRGTPRRH LFTSGWSKFV NSKKIISGDT VVFMKDSDGR MFVGLRRNMS LDDDIADGGL  240
DWFAAMDEGE GEKEEEEKEE VMTEGFARNG KGRVTSTSVA EAMELAAQNK PFEVVYYPSV  300
GWGEFVVKAE DVDVMINGIP WRVGMRVKMG RENYDSSRMD WFQGTVSGVT VPGKDQPWSG  360
SPWRMLQITW DESEILKNVN PVSPWQVELL SETLLLPQVF PPTKRFRTNE MGESSSSITR  420
FSIPDSTMGV LNQTLLSNYD TFFSASMQGA RHPLFSAATY PLFPIDPSLS IDSSFENNIV  480
PKLNVMLPKL NIDTHKPKNL SPHSKSSLTP IDETPNSNLT KSGATSFQLF GCTIQTDQAS  540
DKIDDHNNVE GEDNIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-581838851388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LI4HP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934619.10.0auxin response factor 17
TrEMBLA0A445BTG50.0A0A445BTG5_ARAHY; Auxin response factor
STRINGXP_004515659.11e-165(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-126auxin response factor 17