PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.LAA50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 52680.1 Da PI: 6.3002 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.9 | 5e-24 | 246 | 300 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr C+s+ gC+++k+vers++dp++++itY++eHnh+ Aradu.LAA50 246 SDLWAWRKYGQKPIKGSPYPR----CSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300 699***************996....99888****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-24 | 240 | 302 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.911 | 240 | 302 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-20 | 243 | 302 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-31 | 245 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.7E-19 | 247 | 300 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MCSSSVRAPM ENNNNYKHQG DLTDILRGGP YGGAATASDE PPSSYHWQQQ LENDTTACYF 60 GDPFSTMRDP FLHQLHIPPT SSSSYFEEPP LPPPPLPPPP PTLPTPCYNS YGGAHLQHDM 120 RSSSSSSSSS SSSISCNNIF SNMIQISPST NNTSSSCSSS SSSKLAISSS SSSPPSMLSN 180 VNAMVNATSI PSNKQDCHLL DNASALQISS PRNPALKRRK NQAKKVVCIP APAAANSRQT 240 GEVVPSDLWA WRKYGQKPIK GSPYPRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP 300 WPTQRNALAG STRSQPSKNN TNANIASSKN SETSKVSGNN NKPKEENNNQ QHERGNNNSQ 360 GGSASVVKEE MDHHHHSNHD LELELDNDEE FSDGLSYKPS MIEEGSNNNN QSSEDFFADL 420 GEIEADPLNL LFSSHQGFNA GGGGGGGGDN QRESKALDPF NLFDNWSSGD TNNNNSSFEE 480 PNNKGRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 220 | 303 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 220 | 303 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00171 | DAP | Transfer from AT1G30650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.LAA50 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 8e-51 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015959393.1 | 0.0 | probable WRKY transcription factor 35 | ||||
TrEMBL | A0A444WPA8 | 0.0 | A0A444WPA8_ARAHY; Uncharacterized protein | ||||
STRING | XP_007147420.1 | 1e-128 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5430 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 6e-65 | WRKY DNA-binding protein 35 |