PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.L8SVN

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 286aa MW: 32750.2 Da PI: 8.2421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.L8SVN	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.9	1.1e-54	11	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+v+yL++++++k++++ ++i+evdiyk++Pw+Lp k++ +ekewyfFs+rd+ky++g r+nrat sgyWkatg+dk+++s k + Aradu.L8SVN 11 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDIYKFDPWELPGKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-KCK 106 79**************************.89***********99999*************************************.778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kk Lvfykgr pkg ktdW+mheyrl Aradu.L8SVN 107 HVGVKKALVFYKGRPPKGIKTDWIMHEYRL 136 9*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-65	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	59.603	11	163	IPR003441	NAC domain
Pfam	PF02365	8.9E-27	12	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MEGSSKSCEL LPPGFRFHPT DEELIVYYLC NQATSKPCPA SIIPEVDIYK FDPWELPGKA 60 EFGEKEWYFF SPRDRKYPNG VRPNRATVSG YWKATGTDKA IYSKCKHVGV KKALVFYKGR 120 PPKGIKTDWI MHEYRLLQQS NHNSRTTGSM RLDDCVLCRI YKKKHAAKAL DQGQEYPTTV 180 QINLNASTNN DDQKELMMMK NLPRTCSLTY LLDMNYFGPI SQLLSDGSYN NSSTFEIFQH 240 SNSVDNIGIV DPLVKTQMVE MDDSYYAQDS GKSQVMKQGN DLRGYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-73	11	168	20	173	NAC domain-containing protein 19
3swm_B	1e-73	11	168	20	173	NAC domain-containing protein 19
3swm_C	1e-73	11	168	20	173	NAC domain-containing protein 19
3swm_D	1e-73	11	168	20	173	NAC domain-containing protein 19
3swp_A	1e-73	11	168	20	173	NAC domain-containing protein 19
3swp_B	1e-73	11	168	20	173	NAC domain-containing protein 19
3swp_C	1e-73	11	168	20	173	NAC domain-containing protein 19
3swp_D	1e-73	11	168	20	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.L8SVN

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956910.1	0.0	NAC transcription factor 29
Swissprot	K4BNG7	1e-110	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A444ZUL6	0.0	A0A444ZUL6_ARAHY; Uncharacterized protein
STRING	XP_004490093.1	1e-133	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4103	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-109	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]