PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.KDK03

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 553aa MW: 61961 Da PI: 5.4359

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.KDK03	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.4e-10	477	525	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 rW++ E++ l +v+++G+g+Wk+I + + R + ++k++w++++ Aradu.KDK03 477 RWSPMEEDALRIGVEKFGSGNWKAILSFYSnifQDRKAIDLKDKWRNLM 525 9**********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.622	470	529	IPR017930	Myb domain
SuperFamily	SSF46689	7.03E-15	472	527	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-11	472	526	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-7	474	527	IPR001005	SANT/Myb domain
CDD	cd11660	2.58E-17	476	526	No hit	No description
Pfam	PF00249	2.9E-7	477	524	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence Send to blast
MDPDISRWLA EFQLRSSAPD SVVADFLKSL NLSKPDNKLK KTLLLRILQS EITNASITEE 60 ALEVLEEIEA IDGNDAVPLL DFMRTAYCAI AVECTVKYLS ATSDGVPSKE YLAAMARIWF 120 GRVLKLEHSR SKLFSYELAQ WMENIEAAVV DTEIYQRLAK LNTRYDAFSA VRVYLQKVWE 180 TMGPCFLDTL AEMTFKGMKK ESASSVLLME GVGLNGGHEG KEQLEERAEG SVDGTQEPAK 240 GEKASQKGDP QLKRKLPAFL RCHRGVNKSI AEELGTEHSG SKNGTEFSAE VKVAEESLPE 300 ALNVSDAVGL KLAQKGTNQE GPMENMSVDV DVPNLNTSRA IVLFQPNNAD HEKKSSVHHS 360 RVQVQCPNLM EENNTAHESS NLMEQNSTAH EIPNLMEQNS TAHEIPNLME QNGTAHEIPN 420 LMEQNGTAHE IPNLMEQNST AHESPNSMEK NSTTRRYKRD NSKDNPTGVQ LRRKQRRWSP 480 MEEDALRIGV EKFGSGNWKA ILSFYSNIFQ DRKAIDLKDK WRNLMRTCSF AAAYPLEPSL 540 VVFTSILHFV PPF

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence Send to blast

MDPDISRWLA EFQLRSSAPD SVVADFLKSL NLSKPDNKLK KTLLLRILQS EITNASITEE  60
ALEVLEEIEA IDGNDAVPLL DFMRTAYCAI AVECTVKYLS ATSDGVPSKE YLAAMARIWF  120
GRVLKLEHSR SKLFSYELAQ WMENIEAAVV DTEIYQRLAK LNTRYDAFSA VRVYLQKVWE  180
TMGPCFLDTL AEMTFKGMKK ESASSVLLME GVGLNGGHEG KEQLEERAEG SVDGTQEPAK  240
GEKASQKGDP QLKRKLPAFL RCHRGVNKSI AEELGTEHSG SKNGTEFSAE VKVAEESLPE  300
ALNVSDAVGL KLAQKGTNQE GPMENMSVDV DVPNLNTSRA IVLFQPNNAD HEKKSSVHHS  360
RVQVQCPNLM EENNTAHESS NLMEQNSTAH EIPNLMEQNS TAHEIPNLME QNGTAHEIPN  420
LMEQNGTAHE IPNLMEQNST AHESPNSMEK NSTTRRYKRD NSKDNPTGVQ LRRKQRRWSP  480
MEEDALRIGV EKFGSGNWKA ILSFYSNIFQ DRKAIDLKDK WRNLMRTCSF AAAYPLEPSL  540
VVFTSILHFV PPF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.KDK03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015951523.1	0.0	uncharacterized protein LOC107476251

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2824	32	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-20	MYB_related family protein