PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.KBU6G
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 533aa    MW: 58331.7 Da    PI: 4.909
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.KBU6GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23127227299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+ +a+ +       + ++ +  tl+++d++g +We+++iyr++++r+++t+GW++Fv+++++ +gD+vvF+  ++s++++
  Aradu.KBU6G 127 AKILTRSDANNGGGFSVPRFCADLIfpplnfeEDPPVQ--TLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFM--KDSDGRM 220
                  599***************8888766*****95545444..9************************************************..779**** PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  Aradu.KBU6G 221 FVGIRRN 227
                  ****996 PP
2Auxin_resp71.62.3e-24283368183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdl.dpvrWpnSkWrsLk 83 
                  a++ a+++++FevvY+P++++ eFvvk+e+v   ++ + +svGmR+kma e+ dss+ ++ +Gtv+gv+   +   W++S+Wr+L+
  Aradu.KBU6G 283 AMELAAQNKPFEVVYYPSVGWGEFVVKAEDVDVKMNgILCSVGMRVKMARENYDSSRMTWfQGTVSGVTIPgEAQPWSGSPWRMLQ 368
                  678899*****************************988899***************************96425567********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-31120231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-26122230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.18E-18125226No hitNo description
PROSITE profilePS5086312.393126228IPR003340B3 DNA binding domain
SMARTSM010193.1E-17126228IPR003340B3 DNA binding domain
PfamPF023623.3E-21127227IPR003340B3 DNA binding domain
PfamPF065072.0E-21283368IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MPRRSAPSSS SPPRPTPIPA KFWRACAGIS AHAPVVNSRV YYFPQGHIDQ AASQPLNLSP  60
LVYSRPVIPC RVAAVNFFAD PNTDEVFLKI LLLPVTDGSA QDFLSPAVAA EGSGNGNGDD  120
EKVESYAKIL TRSDANNGGG FSVPRFCADL IFPPLNFEED PPVQTLRITD LHGAVWEFRH  180
IYRGTPRRHL FTSGWSKFVN SKKIISGDTV VFMKDSDGRM FVGIRRNMSP DDGISDGGLD  240
WLSKIVGMDE GEKEKEEEDE EVMMEGFARN GKGRVSSASV AEAMELAAQN KPFEVVYYPS  300
VGWGEFVVKA EDVDVKMNGI LCSVGMRVKM ARENYDSSRM TWFQGTVSGV TIPGEAQPWS  360
GSPWRMLQIT WDESEILKNV SPVSPWQVEF LSGTPSLPQV FPPTKKFRTA DGSKIFSHEV  420
EESSFSMTRL AIPDLAMGVL NQTLLMSSYG TPFPASIQGA RHPLLSAPTC PIFPINPPLS  480
IANSFENNIR PSNSTKSGTA SFQLFGCTIQ TDQASDEIDD HSTAKNDAGE DNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-591838951388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.KBU6G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950371.10.0auxin response factor 17-like
TrEMBLA0A445EAZ30.0A0A445EAZ3_ARAHY; Auxin response factor
STRINGXP_004515659.11e-161(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-131auxin response factor 17