PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.K0D8U | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 720aa MW: 77696.6 Da PI: 8.4122 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 22.5 | 2.3e-07 | 313 | 347 | 7 | 41 |
S1FA 7 eakGlnPGlivllvvgglllvflvgnyilyvyaqk 41 kGl PGlivl+ v+ v l+g i+yvy +k Aradu.K0D8U 313 SNKGLSPGLIVLISVADAAGVALIGLIIVYVYWKK 347 56******************************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08263 | 3.2E-10 | 27 | 67 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
SuperFamily | SSF52058 | 1.3E-48 | 29 | 287 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 6.2E-58 | 29 | 281 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS51450 | 4.986 | 100 | 122 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 6.449 | 124 | 146 | IPR001611 | Leucine-rich repeat |
Pfam | PF13855 | 2.9E-8 | 124 | 183 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 7.003 | 148 | 170 | IPR001611 | Leucine-rich repeat |
PROSITE profile | PS51450 | 4.986 | 221 | 245 | IPR001611 | Leucine-rich repeat |
Pfam | PF04689 | 1.7E-4 | 313 | 347 | IPR006779 | DNA binding protein S1FA |
PROSITE profile | PS50011 | 32.485 | 423 | 718 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 2.3E-12 | 427 | 718 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 1.7E-32 | 428 | 647 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 5.26E-59 | 428 | 715 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 2.0E-14 | 429 | 485 | No hit | No description |
CDD | cd14066 | 3.41E-90 | 429 | 718 | No hit | No description |
Gene3D | G3DSA:1.10.510.10 | 1.6E-33 | 486 | 711 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 546 | 558 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 720 aa Download sequence Send to blast |
MSVNLFLCFF SFSFFFVFLI QTVFSLSPDG VALLTLKSAV DPAGAAALAN WNDGDATPCG 60 WSGVSCSNIS GDPDPRVVGV SLAGRGLRGY LPSELGTLLY LRRLNLHSNA FRGSIPSQLF 120 NATALRSLYL HSNNLSGDLP PSLFSLRRLQ NLDLSDNSLS GSIPNSLRNC SQLQRLVLAR 180 NRFSGKIPAT PWPELREIIQ LDLSANLLEG PIPDQIGELQ SLTGTLNLSF NHLSGNVPES 240 LGKLPVTVSF DLRNNNLSGE IPQTGSFSNQ GPTAFLNNPN LCGFPLQKPC SGSAQSEPGS 300 SPGSKRERSG SRSNKGLSPG LIVLISVADA AGVALIGLII VYVYWKKKDG CNGCSCTGKA 360 KFGGGENGKT RFLCCSLPCM NVGVLKSDDS ELEEGEKGER GRGEGELVAI DKGFNFELDE 420 LLRASAYVLG KSGLGIVYKV VLGNGVPVAV RRLGEGGEQR YKEFAAEVQA IGKVKHPNVV 480 KLRAYYWAPD EKLLISDFIS NGNLTTALRG RNGQPTMNLP WSTRLRIAKG AARGLAYLHE 540 CSPRKFVHGD IKPSNILLDG DFQPRISDFG LNRLISITGN NPSNGGFMGG ALPYFKPSQT 600 EHTNNYKAPE ARVPGSRPTQ KWDVYSFGVV LLELLTGKSP DSTPAPSTSM EVPDMVRWVR 660 KGFEQESPLS EMVDPPLLQE VHAKKEVLAV FHVALSCTEG DPEVRPRMKT VSENLEKIGS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4oh4_A | 1e-46 | 428 | 718 | 49 | 319 | Protein BRASSINOSTEROID INSENSITIVE 1 |
4oh4_B | 1e-46 | 428 | 718 | 49 | 319 | Protein BRASSINOSTEROID INSENSITIVE 1 |
4q5j_A | 2e-46 | 428 | 718 | 49 | 319 | Protein BRASSINOSTEROID INSENSITIVE 1 |
4q5j_B | 2e-46 | 428 | 718 | 49 | 319 | Protein BRASSINOSTEROID INSENSITIVE 1 |
5lpb_A | 9e-47 | 428 | 718 | 24 | 294 | Protein BRASSINOSTEROID INSENSITIVE 1 |
5lpv_A | 9e-47 | 428 | 718 | 24 | 294 | Protein BRASSINOSTEROID INSENSITIVE 1 |
5lpw_A | 9e-47 | 428 | 718 | 24 | 294 | Protein BRASSINOSTEROID INSENSITIVE 1 |
5lpy_A | 9e-47 | 428 | 718 | 24 | 294 | Protein BRASSINOSTEROID INSENSITIVE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.K0D8U |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015961068.1 | 0.0 | receptor protein kinase-like protein ZAR1 | ||||
TrEMBL | A0A445DF37 | 0.0 | A0A445DF37_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G19200.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5400 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12020.2 | 9e-11 | WRKY family protein |