PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.JM1K2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 392aa    MW: 41204 Da    PI: 7.7353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.JM1K2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.6e-1083107126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  Aradu.JM1K2  83 FKTKLCCKFRA-GTCPYVTNCNFAHS 107
                  69*********.*************8 PP
2zf-CCCH18.53.6e-06162187126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  yk + C+ f+    C+yGd+C+F H+
  Aradu.JM1K2 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                  77888********************7 PP
3zf-CCCH42.79e-14253278126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Aradu.JM1K2 253 WKTRICNKWEMTGYCPFGNKCHFAHG 278
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.06E-880113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-1480115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.86882109IPR000571Zinc finger, CCCH-type
SMARTSM003560.001582108IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-783107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-9160189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-15249279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-9250279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225252280IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9252279IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10253278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDYSRDGDVV QIIAGAANDP SVWATEEDYK FWNNEGDSTP SNSGGGSGYD QRKKARSSQD  60
NNATTSSSNN NSNRAKAIGK MFFKTKLCCK FRAGTCPYVT NCNFAHSVEE LRRPPPNWQE  120
IVAAHEEERA NTGSDTVVPA REEFQIPILG SSNYSGESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KYRESVAISL GPGGYGGGGG GAGGGGGGGG TGSGGGASAG AGAGAGAGGG  240
GNGNGPNSKP SNWKTRICNK WEMTGYCPFG NKCHFAHGAA ASHLHGKKFD SGVMTAELHR  300
YGGGLVEGES RDPASAAAPD AKQGGVPSKS PADNVVASVT PVAHSDSMYH MGVPSSQRAT  360
IVLQRPGQRA HQKWKGPDKI SRIYGDWIDD IE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.JM1K2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963286.10.0zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ84UQ31e-121C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A444WVS80.0A0A444WVS8_ARAHY; Uncharacterized protein
STRINGGLYMA01G10610.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-114C3H family protein