PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.J1UD9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Dof | ||||||||
Protein Properties | Length: 265aa MW: 29612.8 Da PI: 4.6428 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.4 | 1.6e-38 | 22 | 78 | 6 | 62 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rkn++s+ Aradu.J1UD9 22 PNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRSK 78 58****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-29 | 11 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.6E-32 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.77 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MLHNHIPMPM PPSWKPTIEV APNCPRCAST NTKFCYYNNY SLSQPRYFCK ACRRYWTKGG 60 SLRNVPVGGG CRKNRRSKST RNQTQHRLQG EDYSSSSADA HQPSSSRDID MAVVFANFLN 120 QAPISEDHGG SSSSSGETEN DAVVVQPKKN NDFGVLCADV EPSSFEQELS LMSGIELDGF 180 DDVVQHDYGV ATWQPPLPPP SMMQMQEMEF SMVPLMNEHH DDDDELLMMP SSMNLVSDDA 240 SWNTNNWSSF DLSTMEVFSS SSSIN |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.J1UD9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934433.1 | 0.0 | dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A445BSL0 | 0.0 | A0A445BSL0_ARAHY; Uncharacterized protein | ||||
STRING | XP_004502598.1 | 3e-78 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 2e-41 | Dof family protein |