PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IB6P2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 268aa    MW: 30313.5 Da    PI: 8.5777
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IB6P2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.1e-19198232135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+ +Tp+WR+gp g+ktLCnaCG+++++ +l
  Aradu.IB6P2 198 CQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRL 232
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.176192228IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-15192242IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15194255No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14196230IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.62E-16197245No hitNo description
PfamPF003204.3E-17198232IPR000679Zinc finger, GATA-type
PROSITE patternPS003440198223IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSSQFQLLQQ LSVTQKVAKL KAFELGMEAL GTVDDLLDFS SDVGEDNDVV VDRCRKGFPC  60
NPECKQPSFT PLAMDDPNYS FSEFAEEELE WLSNKDAFPA VETFVDIPSI RPNMSKHQGT  120
ASVLEYRRSI PNNNCTNNIT LLNGFDHLKV PVRARSKYRS RPRLAIADVS SHQSWWRLSS  180
REISGAEVIK IPTIGRKCQH CGSEETPQWR SGPLGPKTLC NACGVRFKSG RLVPEYRPAT  240
SPTFRHELHS NSHRKIIEMR KQKQMGMV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IB6P2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020993399.10.0GATA transcription factor 1-like
TrEMBLA0A445AHJ20.0A0A445AHJ2_ARAHY; Uncharacterized protein
STRINGGLYMA10G25480.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-42GATA transcription factor 9