PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.H9IXG

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ARF

Protein Properties

Length: 953aa MW: 104878 Da PI: 5.8083

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.H9IXG	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.6	1.8e-21	123	215	1	88
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++s Aradu.H9IXG 123 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDSTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRIETS 215 99***************************954.4444.48*********************************************977654 PP
2	Auxin_resp	126.2	2.1e-41	246	328	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaas++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++gvsdldpvrW+nS+Wr+L+ Aradu.H9IXG 246 AAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPVRWKNSQWRNLQ 328 79*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.45E-42	113	249	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-37	115	235	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.16E-19	122	215	No hit	No description
Pfam	PF02362	9.7E-20	123	215	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-20	123	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.574	123	225	IPR003340	B3 DNA binding domain
Pfam	PF06507	2.8E-36	246	328	IPR010525	Auxin response factor
Pfam	PF02309	3.1E-9	823	912	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	24.655	826	919	IPR000270	PB1 domain
SuperFamily	SSF54277	8.83E-9	839	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0010311	Biological Process	lateral root formation
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MKAPSNGFLP NSGEGEKKTI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE 60 ADFVPSYPNL PSKLICMLHN VVLHADPETD EVYAQMTLQP YDKEAILASD MGLKQNQQPT 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIVAKDLHD STWTFRHIYR 180 GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RIETSRGIKR ANRQQPALSS SVISSDSMHI 240 GILAAAAHAA SNNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF RMMFETEESG 300 VRRYMGTITG VSDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWDVEP TSFVVDFAED 360 ESDIENAFKR AMPWLGDELG MKDASSSIFP GLSLVQWMSM QQQNNQFAAT QSGFFPPSML 420 SSNTLHGNLN SNDQSKILNF QAPVLSAPNL QFNKSNLPNQ LQQQQLVSGS MPTQQSIQPA 480 NKNAMLMTSL PLDSQFQQSI DQQTKAAATT DTVATISIAV FATKHVAEGI AATSRDSNSQ 540 LLQQKNTHLA NQQLPQLPQS QHQPQQLGNN SFPMEKLLNS NSFSSSSLMQ SQQLSVNQPT 600 LNAQKSVITS RAPSSLTDVD VPSCSTSPST NTCQISPPNL MKRNQQAPTT FGGISVVEPT 660 NNLVQELHNK SDMPIKHELS GIKGPDQLKY KGTISDQLEA SSSGTSYCID PGSIHQNFQL 720 PNFCMDGDVQ SHPRQNLPFA SNLDGLAADT MLSRGYDSQK DLQNLLANYG GAPRDIETEL 780 STAAISSQSF GVPNMPFKPG CSSDIPMNDA GVLNNGLWAN QTQRMRTYTK VQKCGSVGRC 840 IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ RTEWKLVYVD HENDILLVGD DPWEEFVSCV 900 QSIKILSSAE VQQMSLDGDL GQVPIPNQAC SGTEGGNAWR GQYDDNSAAS FNR

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MKAPSNGFLP NSGEGEKKTI NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMQKE  60
ADFVPSYPNL PSKLICMLHN VVLHADPETD EVYAQMTLQP YDKEAILASD MGLKQNQQPT  120
EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIVAKDLHD STWTFRHIYR  180
GQPKRHLLTT GWSVFVSTKR LFAGDSVLFI RIETSRGIKR ANRQQPALSS SVISSDSMHI  240
GILAAAAHAA SNNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF RMMFETEESG  300
VRRYMGTITG VSDLDPVRWK NSQWRNLQVG WDESTAGERP SRVSIWDVEP TSFVVDFAED  360
ESDIENAFKR AMPWLGDELG MKDASSSIFP GLSLVQWMSM QQQNNQFAAT QSGFFPPSML  420
SSNTLHGNLN SNDQSKILNF QAPVLSAPNL QFNKSNLPNQ LQQQQLVSGS MPTQQSIQPA  480
NKNAMLMTSL PLDSQFQQSI DQQTKAAATT DTVATISIAV FATKHVAEGI AATSRDSNSQ  540
LLQQKNTHLA NQQLPQLPQS QHQPQQLGNN SFPMEKLLNS NSFSSSSLMQ SQQLSVNQPT  600
LNAQKSVITS RAPSSLTDVD VPSCSTSPST NTCQISPPNL MKRNQQAPTT FGGISVVEPT  660
NNLVQELHNK SDMPIKHELS GIKGPDQLKY KGTISDQLEA SSSGTSYCID PGSIHQNFQL  720
PNFCMDGDVQ SHPRQNLPFA SNLDGLAADT MLSRGYDSQK DLQNLLANYG GAPRDIETEL  780
STAAISSQSF GVPNMPFKPG CSSDIPMNDA GVLNNGLWAN QTQRMRTYTK VQKCGSVGRC  840
IDVTRYKGYD ELRHDLARMF GIEGQLEDPQ RTEWKLVYVD HENDILLVGD DPWEEFVSCV  900
QSIKILSSAE VQQMSLDGDL GQVPIPNQAC SGTEGGNAWR GQYDDNSAAS FNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-166	8	353	39	393	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269\|PubMed:12036261, ECO:0000269\|PubMed:16461383, ECO:0000269\|PubMed:17259263}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.H9IXG

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and ethylene. {ECO:0000269\|PubMed:16461383}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016189155.1	0.0	auxin response factor 19 isoform X3
Swissprot	Q8RYC8	0.0	ARFS_ARATH; Auxin response factor 19
TrEMBL	A0A4P1R007	0.0	A0A4P1R007_LUPAN; Uncharacterized protein
STRING	LPERR06G22130.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4918	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Perilli S, et al. RETINOBLASTOMA-RELATED protein stimulates cell differentiation in the Arabidopsis root meristem by interacting with cytokinin signaling. Plant Cell, 2013. 25(11): p. 4469-78 [PMID:24285791] Sun Y, et al. Manipulation of Auxin Response Factor 19 affects seed size in the woody perennial Jatropha curcas. Sci Rep, 2017. 7: p. 40844 [PMID:28102350] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Olmo R, et al. Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program? Front Plant Sci, 2017. 8: p. 875 [PMID:28603536] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Ayala-Rodríguez JÁ,Barrera-Ortiz S,Ruiz-Herrera LF,López-Bucio J Folic acid orchestrates root development linking cell elongation with auxin response and acts independently of the TARGET OF RAPAMYCIN signaling in Arabidopsis thaliana. Plant Sci., 2017. 264: p. 168-178 [PMID:28969797] Nakamura M, et al. Auxin and ROP GTPase Signaling of Polar Nuclear Migration in Root Epidermal Hair Cells. Plant Physiol., 2018. 176(1): p. 378-391 [PMID:29084900] Hong L, et al. Alternative polyadenylation is involved in auxin-based plant growth and development. Plant J., 2018. 93(2): p. 246-258 [PMID:29155478] Lee K,Park OS,Seo PJ Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Sci Signal, 2018. [PMID:29184030] Kimura T, et al. Asymmetric Auxin Distribution is Not Required to Establish Root Phototropism in Arabidopsis. Plant Cell Physiol., 2018. 59(4): p. 823-835 [PMID:29401292] Schoenaers S, et al. The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth. Curr. Biol., 2018. 28(5): p. 722-732.e6 [PMID:29478854] Huang KL, et al. The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots. Plant Physiol., 2018. 178(1): p. 413-427 [PMID:30026290]