PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.H33XQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 149aa MW: 17373.4 Da PI: 8.204 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.9 | 1.9e-19 | 61 | 148 | 2 | 88 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 +Y +YAk+vGF+vrk ++g+ ++r+f C+k g+ree+ + + +r+++aetrtgC+akl + +++ +++w+v kl +eHnH+ Aradu.H33XQ 61 CYVSYAKSVGFRVRKGDVICG-KHGKYKRRRFFCNKVGHREEKYYNnPNWKREHKAETRTGCEAKLSMYLDEsSSVWRVRKLLEEHNHD 148 7***************99988.6677****************988846778999***************9999***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-17 | 61 | 148 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MNIEGEATYF ESDEGGQNMK ETQENVSCTC ACRGGSRYCG VLTTEDIRNH SWMTSDAVYE 60 CYVSYAKSVG FRVRKGDVIC GKHGKYKRRR FFCNKVGHRE EKYYNNPNWK REHKAETRTG 120 CEAKLSMYLD ESSSVWRVRK LLEEHNHDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.H33XQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020999392.1 | 1e-108 | uncharacterized protein LOC110281462 | ||||
TrEMBL | A0A445BGT7 | 5e-81 | A0A445BGT7_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29551 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 8e-10 | FAR1-related sequence 11 |