PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.GT164
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23757.1 Da    PI: 9.7901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.GT164genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.8e-14951143
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                 k i n+s+r  t  kR+ g++KK  E+S+LC+++++ ii+ ++
  Aradu.GT164  9 KYIANDSKRRATQKKRKSGLIKKVDEISTLCGVDACAIIYTPD 51
                 5699************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.442149IPR002100Transcription factor, MADS-box
CDDcd002662.57E-29285No hitNo description
PRINTSPR004042.2E-7323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-22395IPR002100Transcription factor, MADS-box
PfamPF003191.4E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKVEFKY IANDSKRRAT QKKRKSGLIK KVDEISTLCG VDACAIIYTP DEPRPEVWPS  60
PLGVNRVISR FKEMPVLEQS KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS  120
LGGYQSLDNA TMIDLNDLAW IIDQNIKEVN KQISKLQGQE GTSCNNNRVA TINDEQAQVD  180
NIINSGVFPF VDAANNFQND YGPTPFNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVEFKYIANDSKRRATQKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.GT164
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949931.11e-153agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-47AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A445EVJ51e-127A0A445EVJ5_ARAHY; Uncharacterized protein
STRINGXP_004500454.15e-70(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]