PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FL5Y4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13194.4 Da PI: 10.6213 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.3 | 3.2e-14 | 5 | 67 | 31 | 98 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +++l+ +d++g +W++k+i+r++++r+++t+GW Fv +++L +gD +v + ++el+v ++r Aradu.FL5Y4 5 TPTQELVAKDLHGYEWRFKHIVRGQPRRHLITTGWITFVASKRLVAGDPFVGH-----NGELRVELRR 67 445699******************************************98877.....4566777777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.659 | 1 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-17 | 2 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-13 | 2 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.10E-11 | 4 | 67 | No hit | No description |
Pfam | PF02362 | 7.0E-12 | 5 | 67 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MSQPTPTQEL VAKDLHGYEW RFKHIVRGQP RRHLITTGWI TFVASKRLVA GDPFVGHNGE 60 LRVELRRSTP QPSSMPSSVI SVRACILEYS QLHLMLLQLK LFLLYITSQG GANSLLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldw_A | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldw_B | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldx_A | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldx_B | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldy_A | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
4ldy_B | 2e-28 | 1 | 81 | 155 | 238 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FL5Y4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025695401.1 | 2e-38 | auxin response factor 9 isoform X2 | ||||
Refseq | XP_025695402.1 | 2e-38 | auxin response factor 9 isoform X3 | ||||
Swissprot | Q9ZPY6 | 5e-36 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A444ZNN2 | 7e-37 | A0A444ZNN2_ARAHY; Auxin response factor | ||||
STRING | XP_010266558.1 | 4e-36 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15884 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46530.2 | 1e-38 | auxin response factor 11 |
Publications ? help Back to Top | |||
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