PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.F5TUU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 247aa MW: 28270.2 Da PI: 8.5662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.F5TUU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.3	6e-29	83	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Aradu.F5TUU 83 FYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLTP 170 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-26	83	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLEPLCMKYI VLRTILFSVE LGIDGSINGE TIAHATIGEV SSSFADEDKI ASCSFDPAYK 60 QDQDADEPYV GQEFDSEATA HAFYNAYATR VGFVIRVSKL SRSRRDGSAI GRALVCNKEG 120 YRMPDKREKI VRQRAETRVG CRAMILVRKV SSGKWVVTKF VKEHTHPLTP GKGRRDCIYE 180 QYPNEHDKIR ELSQQLAIEK KRCAAYKRQL ELLFEHIEEH NNSLSKKIQH IVGNVKEIEA 240 EEQQRHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.F5TUU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	1e-112	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025613770.1	1e-164	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_025613771.1	1e-164	protein FAR1-RELATED SEQUENCE 2 isoform X2
TrEMBL	A0A444Y8K5	1e-162	A0A444Y8K5_ARAHY; Uncharacterized protein
STRING	XP_007150433.1	1e-136	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-105	FAR1 family protein