PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.EMW16

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 459aa MW: 53179.6 Da PI: 5.6194

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.EMW16	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	170	241	1	72
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +fYn+YA++ GFs rk++s+ks r g+ + ++fvC +eg+r +++ + +r++++etr+gC a+++++ + Aradu.EMW16 170 EFYNRYARTRGFSARKNRSRKS-RAGSLKLKNFVCHREGFRLQNNYGiGNLKRKPTPETRCGCSAMMEIRVDA 241 6******************9.7777**********999888788999**************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51375	5.393	1	21	IPR002885	Pentatricopeptide repeat
PROSITE profile	PS51375	10.106	22	56	IPR002885	Pentatricopeptide repeat
Pfam	PF13041	3.3E-8	23	68	IPR002885	Pentatricopeptide repeat
TIGRFAMs	TIGR00756	5.9E-5	24	52	IPR002885	Pentatricopeptide repeat
Pfam	PF03101	4.8E-14	170	241	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.027	255	288	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.001	263	290	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MYAKCGSVRV ARALFEMLRE ERVVSWNAII TGYAMHGLAK EALELFEVMR KEAWPDLITF 60 VGVLAACSRG LLLNEGQAFY DMMMRDYGIN PTVQHYTCME VMGQEFSHEG VNSEHTSYDQ 120 YEQEEEKYEE VDVDYMDEDD TSVEPMIEFW NIRDEDVCHF HFSDVDITFE FYNRYARTRG 180 FSARKNRSRK SRAGSLKLKN FVCHREGFRL QNNYGIGNLK RKPTPETRCG CSAMMEIRVD 240 APSGHRMPNE MWRVFYCDIE MEFNCSCMRM ESFGIPCEHI ICVLVHEDIE ELPRSLVLPR 300 WTKTAKVSFQ NARGLHWDSL MLSQYGCLMD WFRQLANFAC RDNERFIFTR EMAMNLLKQF 360 KEEDAAQKEL VNDADSVRDG VQVDNSGAGL ATNDLGHSMP RDPRKCRTKG GLHSPIKENI 420 DVDSVAWRAT IEQLVVFVVA SHSQKAGEMT HLIMTRMIT

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MYAKCGSVRV ARALFEMLRE ERVVSWNAII TGYAMHGLAK EALELFEVMR KEAWPDLITF  60
VGVLAACSRG LLLNEGQAFY DMMMRDYGIN PTVQHYTCME VMGQEFSHEG VNSEHTSYDQ  120
YEQEEEKYEE VDVDYMDEDD TSVEPMIEFW NIRDEDVCHF HFSDVDITFE FYNRYARTRG  180
FSARKNRSRK SRAGSLKLKN FVCHREGFRL QNNYGIGNLK RKPTPETRCG CSAMMEIRVD  240
APSGHRMPNE MWRVFYCDIE MEFNCSCMRM ESFGIPCEHI ICVLVHEDIE ELPRSLVLPR  300
WTKTAKVSFQ NARGLHWDSL MLSQYGCLMD WFRQLANFAC RDNERFIFTR EMAMNLLKQF  360
KEEDAAQKEL VNDADSVRDG VQVDNSGAGL ATNDLGHSMP RDPRKCRTKG GLHSPIKENI  420
DVDSVAWRAT IEQLVVFVVA SHSQKAGEMT HLIMTRMIT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.EMW16

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025629870.1	1e-148	protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14019	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	3e-08	FAR1-related sequence 3