PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.CY3QH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 153aa MW: 17621.2 Da PI: 9.6549 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.3 | 2.5e-13 | 79 | 148 | 2 | 71 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkke 71 Y+eY++ GF vr+ k++k+kr ++++ t+ C+++g+ +++ + ++++r++++ tr+gC ++++k + Aradu.CY3QH 79 IYEEYSRVKGFAVRQGKKTKNKRG-KFVRITYLCNRKGFWDKKLLEkQDRKREHKVITRCGCPTEIQIKPR 148 59***************9999655.5*************98886653678888999************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.1E-12 | 79 | 148 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEDAFVDEAV LDGVKGWRTL PSKRYVKIVQ DMGMEDDEVE VGGGQQSVKN GTNAAEVVTI 60 TANDFLRMEF NNPKEAACIY EEYSRVKGFA VRQGKKTKNK RGKFVRITYL CNRKGFWDKK 120 LLEKQDRKRE HKVITRCGCP TEIQIKPRID TEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.CY3QH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029144539.1 | 1e-78 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445B5X6 | 1e-82 | A0A445B5X6_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9185 | 2 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-06 | FAR1-related sequence 10 |