PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CNU6V
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 707aa    MW: 78260.1 Da    PI: 8.9461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CNU6VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07624673147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Aradu.CNU6V 624 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 673
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.04E-7425516IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.733619678IPR017930Myb domain
SMARTSM007172.0E-7623676IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10624674IPR009057Homeodomain-like
SuperFamilySSF466894.34E-14625705IPR009057Homeodomain-like
CDDcd116602.96E-17625675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MVLERRLDYD FNGHQVQVKR RARSARRRAK FQRRVEDNQM CAFDLLATVA GKLFLQEKEH  60
PLTSGDKSSE KIQQGFVKEE CRDASEAFKT ELSNEGCHRR CEHGFVKDDS KNADKPFKAE  120
LYVEGSSDIK CLSNSEVQSE NCHFKEHSHP KIDGNSHVAS MVANSSCLER LGAERLADGK  180
NHNEVGNLSS KVELGLSSKV ELGSSGSPYT IGCNLGGDVT KVKDELHKFA KAPVVTSTEM  240
RCLDDPVGER SPVQLSSGGN AKLSGCVDNM PYSTLSEGYD NVPVVSRDDD ENFSGCDNPS  300
LETKSFRPIS HIGDQSIRKT LAAKYCKVAQ QSKHDTLSNS VEVVNGNLNE TYTSRKNFYK  360
RQRSEMNIPF KKRKIFNCGS FSNSNELVRS GGTYDKKNGA SSTSHGTHKD TGMSSLGAHQ  420
YSSLGSKDSH VNLRIKSFRV PELFIEIPET ATIESLKRSV MEAVTAVLGG GLRVGVILHG  480
KKVRDDSKTL LQAGISHDKQ LDALGFTLEP ISSQSPTPVC AADSRHVPTV DKPQPLPRYP  540
SSAAIHQRNQ SCSDVFPEHR VTSLGNLVES DQDSALSPVN TAVYKRLADS RALVTVPEMG  600
VQALSLLPVP QKSKRPETVQ RRIRRPFSVA EVEALVQAVE KLGTGRWRDV KLRAFDNAKH  660
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRGEVA SCKWVMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-486087071100Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453458ESLKRS
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.CNU6V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941296e-77BT094129.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020984793.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E31e-121TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A445BVG40.0A0A445BVG4_ARAHY; Uncharacterized protein
STRINGXP_007150334.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-101TRF-like 2