PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C1Q0A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 372aa    MW: 41877.9 Da    PI: 7.6868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C1Q0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.8e-48401652128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   pGfrF Ptdeel+++yL+kk++g++ ++ +vi+e++++++ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk++ v+s ++ 
  Aradu.C1Q0A  40 FPGFRFCPTDEELISYYLRKKLDGDEDSV-QVISELELCTFEPWDLPgKSFIQSDTEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERIVKS-GQD 135
                  69************************999.99***************777777899********************************999998.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g+k+tLvf+ grapkge+t+W+mhey +
  Aradu.C1Q0A 136 VIGTKRTLVFHLGRAPKGERTEWIMHEYCV 165
                  ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5431180IPR003441NAC domain
PROSITE profilePS5100552.88739181IPR003441NAC domain
PfamPF023656.8E-2641164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
SKEQNNITLS DTKPFYLHLR IMVDTDSSEA HMSIAASSIF PGFRFCPTDE ELISYYLRKK  60
LDGDEDSVQV ISELELCTFE PWDLPGKSFI QSDTEWFFFS PRGRKYPNGS QSKRATECGY  120
WKATGKERIV KSGQDVIGTK RTLVFHLGRA PKGERTEWIM HEYCVNDKSQ DSLVICRLKK  180
NTEFRANDHS NKTSHDSDCG VSEEVTVQGG TYVPIQDKET GCSSKRTSSS NSSPSTTTGQ  240
IESSHRVVNE ANQANEVDED DCYAEILNDD IIKLDESTLS RPSPPQGTAN RRIRLRVPKS  300
TVPKSRVPKS TVPTGNGCHC SKQSSNKINT FLPYALVVFT FFVFTLLALG FFLIIRRSQT  360
TAQYSRDLSR VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-45301812165NO APICAL MERISTEM PROTEIN
1ut4_B1e-45301812165NO APICAL MERISTEM PROTEIN
1ut7_A1e-45301812165NO APICAL MERISTEM PROTEIN
1ut7_B1e-45301812165NO APICAL MERISTEM PROTEIN
4dul_A1e-45301812165NAC domain-containing protein 19
4dul_B1e-45301812165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.C1Q0A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936095.10.0NAC domain-containing protein 40 isoform X3
SwissprotQ9XIN74e-97NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A444Y7831e-152A0A444Y783_ARAHY; Uncharacterized protein
STRINGGLYMA13G39090.21e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.18e-96NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]