PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.BIZ8F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | Dof | ||||||||
Protein Properties | Length: 184aa MW: 20948.2 Da PI: 9.2341 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.8e-39 | 12 | 69 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ Aradu.BIZ8F 12 GGVKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRR 69 5689***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 8 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.329 | 14 | 68 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.6E-33 | 14 | 68 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 16 | 52 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MERAEQQQKE KGGVKCPRCD SSNTKFCYYN NYSLSQPRHF CKACKRYWTR GGTLRNVPVG 60 GGCRKNKRRL NHPHPNTTSS QINTNNHDVN LPSLFHTFTS HAALQNNHAF AASSSSYDSI 120 LLPPASTTMM PMQQNVINGG YYCQNQMEQQ PHVPNFSDPN SLYYWSNAFT SWNNDNNHPL 180 TSLI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.BIZ8F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943077.1 | 1e-138 | dof zinc finger protein DOF2.2 isoform X1 | ||||
Refseq | XP_025621970.1 | 1e-138 | dof zinc finger protein DOF2.2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 3e-34 | Dof family protein |