PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.BIM74 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 1421aa MW: 160832 Da PI: 5.2871 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 350.3 | 3.2e-107 | 379 | 724 | 1 | 346 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avss+d++ a++lL+++++++s gd qRla++f++AL+arla+s+++ly +l+++++s ++ ++a+++f ++P+ k++ + a Aradu.BIM74 379 LRTLLVLCAQAVSSDDHSTANELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKS---AADMVKAYQMFISACPFKKLAIIFA 473 5789*********************************************************999998888...99*********************** PP GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Il+ + + e++Hi+Df+i +G+QWpaL+ L++Rp+gp +lRiTg++ p++g +e+++etg+rLak++e+++vpfefn+ +a+++e++++e Aradu.BIM74 474 NHTILNLPKPKevETLHIVDFGIRYGFQWPALIFRLSNRPGGPRKLRITGIELPQPGfrPAERVQETGRRLAKYCERFNVPFEFNA-IAQKWETIKIE 570 ******999887899*****************************************9*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +L++k++E laVn++++ ++llde+v l+s+rd+vLkl+++ +P++++++ + ++n++ F++rf eal +ys+lfd l++++ re+ r + E+e++ Aradu.BIM74 571 DLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFF 668 ************************************************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 gre+vn++aceg+er+er et+++W+ r ++aGF+++pl+++ + ++ l+ v+ Aradu.BIM74 669 GREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYH 724 *************************************************9999874 PP | |||||||
2 | GRAS | 261.3 | 3.4e-80 | 1078 | 1352 | 1 | 272 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL+ cA+avs+ d++ a++lL++++++++p+gd++qR a+yf+++L+arl++ ++++ + +t++ + +e l+a+k+f ++P+ kf+++ Aradu.BIM74 1078 LRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMSACPFSKFANF 1173 5789***************************************************999999888888888888*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 aN++I++a++++e++HiiDf+i +G+QWp L++ L++R+ gp +l+iTg++ p++g +e+l+etg+rLa+++e+++vpfe+n+++++++e++ Aradu.BIM74 1174 FANKMIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLkKLKITGIEFPQPGfrPAERLHETGRRLANYCERFKVPFEYNAIASRNWETI 1269 ****************************************66544************9*****************************9999***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 ++e+L+++++E laVn++ + ++l+de+ +++s+rd+vL+l+++++P+++v + + ++n++ F++rf eal ++sa++d+++ Aradu.BIM74 1270 QVEDLKIESNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIRKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMID 1352 ********************************************************************************997 PP | |||||||
3 | GRAS | 39 | 1.2e-12 | 1352 | 1418 | 307 | 373 |
GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 r et+++W++r ++aGFk++pl+e+ +++ ++ l++ + + + +e+ +++++gWk+r L++ ++W Aradu.BIM74 1352 DRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVFDEDGNWMLQGWKGRVLYASTCW 1418 699************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.701 | 353 | 732 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-104 | 379 | 724 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 50.609 | 1052 | 1421 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-77 | 1078 | 1352 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 1421 aa Download sequence Send to blast |
MEEVNFLSDF MPLKMDPNFN SSFLNGFRFN QVPTIPNVEE QCPDPVNGLE TMNFGFMNDP 60 FLLPPDQNNS QNPTSSISTI TADEDSPLDD TDFSATVLRY INQMLMEEDM EEKPCMFHDS 120 LALQAAEKSL YDAIGGTYPH LPPHPLSSSI QHQAQNYHNV ESPDDSLSSN FSSYSSGLST 180 ISTSNLVESH WSNFDPSDFT TANNGGGLLG SSGAGFFDSS FLSKSESMLQ FKRGMEEASK 240 FLPKGNPLVI DLENSTFNPS FQKAPQHVDI KEERDEREYF SGESKGRKNH EREDQVELQD 300 GRSNKQSAIY REDSELSELF DKILLGTGCG KEAPPRCICD EDKPNGQDKN VQQKEETNKF 360 SSGKNRVKKQ GNKKGVVDLR TLLVLCAQAV SSDDHSTANE LLKQIRQHSS RLGDGSQRLA 420 HCFANALEAR LAGSGTQLYT SLTSKRKSAA DMVKAYQMFI SACPFKKLAI IFANHTILNL 480 PKPKEVETLH IVDFGIRYGF QWPALIFRLS NRPGGPRKLR ITGIELPQPG FRPAERVQET 540 GRRLAKYCER FNVPFEFNAI AQKWETIKIE DLKIKENELL AVNCMVRFKN LLDETVVLNS 600 PRDAVLKLIR KANPNIFIHA TVNGNYNAPF FVTRFREALF HYSTLFDVLD TNVDREDPMR 660 LMFEEEFFGR EVVNIIACEG SERVERPETY KQWQVRNTRA GFRQLPLDDH LIHKLRCKLK 720 DVYHVGRAES FMLPLVGYQH SYQSMDPNYP IGGSDDFMNS FQIGEDGTII FSDDQNQFYY 780 DANQHLDPLY QHVADQLFDE FPQYTSYVEE AAAAPVASTA VDPSVEDADF SETAKFITQV 840 LMEEGVEQRP FYDPFSLNAT EQSFYDALND VLIDNINLPL SPNEHPLDPS VSPDTFTSGD 900 HPFQFNSHAI SQHDSNASYV TNFGVYDVDT SFTKLLAQNI FSDSDSVSQF RRGLEEASKF 960 LPPGPQLVTG FETTPAVAVP IDELKGDKAV GLKGRKNHER EEWSDDTEEG RSNKHSATSS 1020 VVDESELSEM FDKVLLSIGA PMCFPVNNEV EKASNPSTSN GGKGRPKRQG KKKETIDLRT 1080 LLVLCAQAVS ACDNRTATEL LKQIRQHSTP SGDATQRTAH YFANGLEARL HGDGTGTQGF 1140 YTYVSTKRLS AAEFLKAYKV FMSACPFSKF ANFFANKMIM KAAQNAETLH IIDFGILYGF 1200 QWPILIKFLS DRETGPLKKL KITGIEFPQP GFRPAERLHE TGRRLANYCE RFKVPFEYNA 1260 IASRNWETIQ VEDLKIESNE FLAVNCHKRF ENLMDETIEV NSPRDAVLQL IRKINPDIFV 1320 QAIVNGSYNA PFFATRFREA LFHFSAIYDM IDRPETYKQW QARNTRAGFK QLPLNEELMA 1380 KFSAKLKEWY HKDFVFDEDG NWMLQGWKGR VLYASTCWVP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-43 | 383 | 1352 | 8 | 331 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.BIM74 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952243.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A445E4F5 | 0.0 | A0A445E4F5_ARAHY; Uncharacterized protein | ||||
STRING | XP_008223833.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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