PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.BIM74
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 1421aa    MW: 160832 Da    PI: 5.2871
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.BIM74genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.33.2e-1073797241346
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avss+d++ a++lL+++++++s  gd  qRla++f++AL+arla+s+++ly +l+++++s    ++ ++a+++f  ++P+ k++ + a
  Aradu.BIM74 379 LRTLLVLCAQAVSSDDHSTANELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKS---AADMVKAYQMFISACPFKKLAIIFA 473
                  5789*********************************************************999998888...99*********************** PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  N++Il+  + +  e++Hi+Df+i +G+QWpaL+  L++Rp+gp +lRiTg++ p++g   +e+++etg+rLak++e+++vpfefn+ +a+++e++++e
  Aradu.BIM74 474 NHTILNLPKPKevETLHIVDFGIRYGFQWPALIFRLSNRPGGPRKLRITGIELPQPGfrPAERVQETGRRLAKYCERFNVPFEFNA-IAQKWETIKIE 570
                  ******999887899*****************************************9*****************************.7********** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L++k++E laVn++++ ++llde+v l+s+rd+vLkl+++ +P++++++  + ++n++ F++rf eal +ys+lfd l++++ re+  r + E+e++
  Aradu.BIM74 571 DLKIKENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFF 668
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                  gre+vn++aceg+er+er et+++W+ r ++aGF+++pl+++   + ++ l+ v+ 
  Aradu.BIM74 669 GREVVNIIACEGSERVERPETYKQWQVRNTRAGFRQLPLDDHLIHKLRCKLKDVYH 724
                  *************************************************9999874 PP

2GRAS261.33.4e-80107813521272
         GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96  
                   l++lL+ cA+avs+ d++ a++lL++++++++p+gd++qR a+yf+++L+arl++ ++++    +  +t++ + +e l+a+k+f  ++P+ kf+++
  Aradu.BIM74 1078 LRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMSACPFSKFANF 1173
                   5789***************************************************999999888888888888*********************** PP

         GRAS   97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 
                    aN++I++a++++e++HiiDf+i +G+QWp L++ L++R+ gp  +l+iTg++ p++g   +e+l+etg+rLa+++e+++vpfe+n+++++++e++
  Aradu.BIM74 1174 FANKMIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLkKLKITGIEFPQPGfrPAERLHETGRRLANYCERFKVPFEYNAIASRNWETI 1269
                   ****************************************66544************9*****************************9999***** PP

         GRAS  190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 
                   ++e+L+++++E laVn++ + ++l+de+ +++s+rd+vL+l+++++P+++v +  + ++n++ F++rf eal ++sa++d+++
  Aradu.BIM74 1270 QVEDLKIESNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIRKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMID 1352
                   ********************************************************************************997 PP

3GRAS391.2e-1213521418307373
         GRAS  307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                    r et+++W++r ++aGFk++pl+e+ +++ ++ l++ + + +  +e+ +++++gWk+r L++ ++W
  Aradu.BIM74 1352 DRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVFDEDGNWMLQGWKGRVLYASTCW 1418
                   699************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.701353732IPR005202Transcription factor GRAS
PfamPF035141.1E-104379724IPR005202Transcription factor GRAS
PROSITE profilePS5098550.60910521421IPR005202Transcription factor GRAS
PfamPF035141.2E-7710781352IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 1421 aa     Download sequence    Send to blast
MEEVNFLSDF MPLKMDPNFN SSFLNGFRFN QVPTIPNVEE QCPDPVNGLE TMNFGFMNDP  60
FLLPPDQNNS QNPTSSISTI TADEDSPLDD TDFSATVLRY INQMLMEEDM EEKPCMFHDS  120
LALQAAEKSL YDAIGGTYPH LPPHPLSSSI QHQAQNYHNV ESPDDSLSSN FSSYSSGLST  180
ISTSNLVESH WSNFDPSDFT TANNGGGLLG SSGAGFFDSS FLSKSESMLQ FKRGMEEASK  240
FLPKGNPLVI DLENSTFNPS FQKAPQHVDI KEERDEREYF SGESKGRKNH EREDQVELQD  300
GRSNKQSAIY REDSELSELF DKILLGTGCG KEAPPRCICD EDKPNGQDKN VQQKEETNKF  360
SSGKNRVKKQ GNKKGVVDLR TLLVLCAQAV SSDDHSTANE LLKQIRQHSS RLGDGSQRLA  420
HCFANALEAR LAGSGTQLYT SLTSKRKSAA DMVKAYQMFI SACPFKKLAI IFANHTILNL  480
PKPKEVETLH IVDFGIRYGF QWPALIFRLS NRPGGPRKLR ITGIELPQPG FRPAERVQET  540
GRRLAKYCER FNVPFEFNAI AQKWETIKIE DLKIKENELL AVNCMVRFKN LLDETVVLNS  600
PRDAVLKLIR KANPNIFIHA TVNGNYNAPF FVTRFREALF HYSTLFDVLD TNVDREDPMR  660
LMFEEEFFGR EVVNIIACEG SERVERPETY KQWQVRNTRA GFRQLPLDDH LIHKLRCKLK  720
DVYHVGRAES FMLPLVGYQH SYQSMDPNYP IGGSDDFMNS FQIGEDGTII FSDDQNQFYY  780
DANQHLDPLY QHVADQLFDE FPQYTSYVEE AAAAPVASTA VDPSVEDADF SETAKFITQV  840
LMEEGVEQRP FYDPFSLNAT EQSFYDALND VLIDNINLPL SPNEHPLDPS VSPDTFTSGD  900
HPFQFNSHAI SQHDSNASYV TNFGVYDVDT SFTKLLAQNI FSDSDSVSQF RRGLEEASKF  960
LPPGPQLVTG FETTPAVAVP IDELKGDKAV GLKGRKNHER EEWSDDTEEG RSNKHSATSS  1020
VVDESELSEM FDKVLLSIGA PMCFPVNNEV EKASNPSTSN GGKGRPKRQG KKKETIDLRT  1080
LLVLCAQAVS ACDNRTATEL LKQIRQHSTP SGDATQRTAH YFANGLEARL HGDGTGTQGF  1140
YTYVSTKRLS AAEFLKAYKV FMSACPFSKF ANFFANKMIM KAAQNAETLH IIDFGILYGF  1200
QWPILIKFLS DRETGPLKKL KITGIEFPQP GFRPAERLHE TGRRLANYCE RFKVPFEYNA  1260
IASRNWETIQ VEDLKIESNE FLAVNCHKRF ENLMDETIEV NSPRDAVLQL IRKINPDIFV  1320
QAIVNGSYNA PFFATRFREA LFHFSAIYDM IDRPETYKQW QARNTRAGFK QLPLNEELMA  1380
KFSAKLKEWY HKDFVFDEDG NWMLQGWKGR VLYASTCWVP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4338313528331GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.BIM74
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952243.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A445E4F50.0A0A445E4F5_ARAHY; Uncharacterized protein
STRINGXP_008223833.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]