PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.AA5PY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 587aa    MW: 67687.6 Da    PI: 5.3513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.AA5PYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.56.5e-11170227158
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraet 58 
                  +fYn+YA++ GFs rk++s+ks r g  + ++fvC +eg+r +++   ++ ++++++et
  Aradu.AA5PY 170 EFYNRYARTRGFSARKNRSRKS-RAGALKLKNFVCHREGFRPQNNYGiEKFKKKPTPET 227
                  6********************9.7777**************999877434444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.415121IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.7992252IPR002885Pentatricopeptide repeat
PfamPF130413.0E-82368IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.2E-52451IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.415691IPR002885Pentatricopeptide repeat
PfamPF031014.2E-8170227IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.163292340IPR007527Zinc finger, SWIM-type
SMARTSM005750.001315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MYAKCGSVRV ARALFEMLKE ERVVSWNAII TGYAMHGLAK EALELFEVMR KEARPDLITF  60
VGVLAACSRG LLLNEGQAFY DMMMRDYGIN PTVQHYTCME VMGQEFSHEG VNSEHTSYDQ  120
YEQEEEKYEE VDVDYMDEDD TSVEPMIEFW NIRDEDVCHF HFSDVDITFE FYNRYARTRG  180
FSARKNRSRK SRAGALKLKN FVCHREGFRP QNNYGIEKFK KKPTPETRWK EVQADLASVN  240
GRPSLQTCFQ QLERSAANVY TLSIFHMFQP ILVRAASMKV INMRQTGSYV IYSVALDRMP  300
NEMWRVFCCD IEMEFNCSCM RMESFGIPCE HIICVLVHED IEELPRSLVL PRWTKTAKVG  360
LQNAVGLHWD SLMLSQYGCL MDWFRQLANF ACRDNERFIF TREMAMNLLK QFKEEDAAQK  420
ELVNDADSVR DGVQVDNSGA GLATNDLGHS MPRDPRKCRT KGGASQSNKR KHRCGQCGME  480
GHNRTTCRVR RGISQSEGRG NDTFDNDSDD HMNIEDDSLV YDENASYSSN EVLFFLEAIR  540
MDERLSSTLD QHLVCPIVTP SPMFVQKDGN LRVLEEEGLA KASEFQF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.AA5PY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189092.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_016189094.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020974546.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Z5470.0A0A444Z547_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2917722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-16FAR1-related sequence 3