PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.A6V6U | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 486aa MW: 54371.1 Da PI: 9.1164 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.2e-08 | 437 | 484 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +W+ E+e l +v+++G g+WktI + ++R ++k++w++ Aradu.A6V6U 437 KWSSLEEETLRTGVQMFGAGNWKTIRSFYSdvfEHRLSVDLKDKWRNM 484 8*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.369 | 430 | 486 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 430 | 486 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.72E-13 | 433 | 485 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0083 | 434 | 486 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-6 | 437 | 484 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.16E-16 | 438 | 486 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
SSAPDSLVSK ILKVLNLSGA DPNLKKTLLL RTLRSQLCNA SITETALEIL EQIEAIDRND 60 AVPIIDSMRR AYCAVAVECT VKYLAASYDG TTSGKYLSAV TRIWRGRVEE LEQGQSELFF 120 DETARWRDDI EAALFDTRVS DRLKELNTRN DAFTEVRFYL QEVWETMGPS FLESVAEMTK 180 NKGKTKGKGK GLPNVILNPA PVTIVPGYTT GVCRNASGAE QARDHGVDDN GDGGNDGSRC 240 MDGVEVKRAE GSVDGTQEHA KKKKARGNPQ LKRKPPAFRR CSRGVKMSSA EELGTERSWR 300 KNDTVLSGEV KTARESLKSS SSELRALVND PLLEALDIPD AVRSKLARKG TNHEQPMENH 360 SGDVDVRNSN TCSTISPYQP NDAEHKKSPS VEPNKTAHKR PNLMEPSGTS QTYEWNDSIE 420 NMPNGMQPRR KKRKNRKWSS LEEETLRTGV QMFGAGNWKT IRSFYSDVFE HRLSVDLKDK 480 WRNMMR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 428 | 436 | RRKKRKNRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.A6V6U |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025692045.1 | 0.0 | uncharacterized protein LOC112794013 isoform X1 | ||||
Refseq | XP_025692046.1 | 0.0 | uncharacterized protein LOC112794013 isoform X1 | ||||
Refseq | XP_025692047.1 | 0.0 | uncharacterized protein LOC112794013 isoform X1 | ||||
TrEMBL | A0A445AMC9 | 0.0 | A0A445AMC9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445AMI7 | 0.0 | A0A445AMI7_ARAHY; Uncharacterized protein | ||||
STRING | XP_004500362.1 | 1e-138 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2824 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 7e-16 | MYB_related family protein |