PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.A1GM4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 37835.5 Da PI: 6.1079 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1.1e-17 | 259 | 292 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Aradu.A1GM4 259 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 292 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.8E-75 | 1 | 340 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.8E-16 | 253 | 303 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.846 | 253 | 289 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-15 | 256 | 316 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 257 | 290 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.54E-14 | 258 | 315 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 259 | 284 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-15 | 259 | 292 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MIEPNFVDDV DCGSFFDHID DLLDFPADDA ATADASLPVA AACAGNIETP ASFWSSESNS 60 GLPATDTAFP RGDAVTDLSA EISVPYEDIV QLEWLSTFVE DSFSGRSLTM KKVELPTTIT 120 TIKEDLTRSQ FRTSSPVSVL ESSSSCSREK VVAQCPEIYI PVVPCGRARS KRQRPSSFKA 180 HPVMQLISPA SSVGENTQPN VILKASSDSE NFAESHPAIK LAKQASGEHK KKKKTKAPNP 240 LTEDDDHDTN QNSAAARKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA 300 ASPTFCPAVH SNSHKKVLEM RNKFGFSTDS AASPELIPNT SRLGLEYM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.A1GM4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 7e-69 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015967907.1 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_020999313.1 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_025702337.1 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_025702339.1 | 0.0 | GATA transcription factor 8 isoform X2 | ||||
TrEMBL | A0A445CY60 | 0.0 | A0A445CY60_ARAHY; GATA transcription factor | ||||
STRING | GLYMA02G08145.2 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 4e-43 | GATA family protein |