PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.9T4H8

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 228aa MW: 25821.9 Da PI: 4.7372

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.9T4H8	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.3	1.9e-33	9	161	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................................kvkaeekewyfFskrd 65 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ ae ++wy++s+r Aradu.9T4H8 9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPFDPWELDGiilslcsntcmhiarelklmntimcvsvcvcagRALAEGNQWYYYSRRT 105 79***********************999.99**********956899*********99999999988887664455889*9984 PP NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+t++gyW+ g +++v+s+ +++ vg+kk vfy g+ap+g++t+W+m+eyrl Aradu.9T4H8 106 --------QNRVTANGYWNPMGIEEAVVSNsSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRL 161 ........58*************99867778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-39	6	54	IPR003441	NAC domain
PROSITE profile	PS51005	41.544	9	194	IPR003441	NAC domain
Pfam	PF02365	3.4E-21	10	161	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-39	88	192	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGDSNNVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLDLYPFD PWELDGIILS 60 LCSNTCMHIA RELKLMNTIM CVSVCVCAGR ALAEGNQWYY YSRRTQNRVT ANGYWNPMGI 120 EEAVVSNSSN RRVGIKKFYV FYVGEAPHGN RTNWIMQEYR LSDSAASSSR SSTKRKSQPK 180 TDHSKWVVCR VHESDENDDD GDGDGTELSC LDEVFLSLDD LDEVSLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-34	5	197	16	171	NAC domain-containing protein 19
3swm_B	2e-34	5	197	16	171	NAC domain-containing protein 19
3swm_C	2e-34	5	197	16	171	NAC domain-containing protein 19
3swm_D	2e-34	5	197	16	171	NAC domain-containing protein 19
3swp_A	2e-34	5	197	16	171	NAC domain-containing protein 19
3swp_B	2e-34	5	197	16	171	NAC domain-containing protein 19
3swp_C	2e-34	5	197	16	171	NAC domain-containing protein 19
3swp_D	2e-34	5	197	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.9T4H8

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029153137.1	1e-172	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	1e-76	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A444ZTC4	1e-116	A0A444ZTC4_ARAHY; Uncharacterized protein
STRING	GLYMA08G08010.1	1e-101	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-72	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]