PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.9P656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | SRS | ||||||||
Protein Properties | Length: 167aa MW: 18292.8 Da PI: 9.918 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 69.9 | 8.3e-22 | 103 | 165 | 3 | 60 |
DUF702 3 sgtasCqdCGnq.....akkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaas 60 +++++CqdC C h+RCRtCCksrg++C+thvkstWvpaakr +rqqql a++ Aradu.9P656 103 TTGINCQDCXXXxxxxxXXXXCPHMRCRTCCKSRGYECKTHVKSTWVPAAKRCKRQQQLMALQ 165 67799****875111114578*************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.5E-20 | 105 | 166 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.9E-16 | 108 | 154 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MARTPTTVAA TTITLPRSDA TQRRCFNVPQ FQTMERASAP ATTSRDSTSP SIPSSLPPRS 60 PLIGYCAWHS VSRASDEQSL SRSAVMAMRS ATAGEVGGAG SRTTGINCQD CXXXXXXXXX 120 XXXCPHMRCR TCCKSRGYEC KTHVKSTWVP AAKRCKRQQQ LMALQDH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.9P656 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025687197.1 | 2e-29 | protein SHI RELATED SEQUENCE 1 isoform X1 | ||||
Refseq | XP_025687206.1 | 2e-29 | protein SHI RELATED SEQUENCE 1 isoform X2 | ||||
TrEMBL | A0A445EAZ4 | 8e-76 | A0A445EAZ4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G24510.3 | 6e-24 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-22 | SHI-related sequence 5 |