PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9729Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 268aa    MW: 30521.4 Da    PI: 6.173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9729ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345e-11351111698
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   ++pk+f  e+g   +++  + l+ ++g  W++    + + g++++++GWkeF++   L+ g ++ F++++  + +  v +f+
  Aradu.9729Z  35 QTIPKTFSMEFGDGVPNP--VYLKPPDGTAWKIDW--SEYHGGILFENGWKEFASYYSLDHGHMLWFEYNE--TSNIQVNIFD 111
                  48*****99995554555..***************..*******************************965..4445888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-165114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54720113IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1527113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-736111No hitNo description
PfamPF023628.0E-836111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASSSFQVTC FYKIVLRQSL EDGNLTSFIL SFELQTIPKT FSMEFGDGVP NPVYLKPPDG  60
TAWKIDWSEY HGGILFENGW KEFASYYSLD HGHMLWFEYN ETSNIQVNIF DMTCLEIDYP  120
SLDHISDDDS IEILNELPPR GWPRKTEKAA PKTPSASTSK MFTSSAKTEG VKWCPKIDYP  180
SKDHIDDGNM VKVENEPPRR GRGRPRKTEK AAPKTPSPCT SKMFTSSAKT KEVKWRAEIQ  240
YPSKHHIDED NMAKVRDGFI LASAPTEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.9729Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029145166.11e-171uncharacterized protein LOC112717079 isoform X1
TrEMBLA0A445B0T21e-163A0A445B0T2_ARAHY; Uncharacterized protein
STRINGXP_007153416.12e-34(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-15B3 family protein