PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.91DIX | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 386aa MW: 45439.3 Da PI: 6.9669 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.7 | 7.8e-18 | 81 | 171 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YA+ F r +++ + +g+ +r++vC++eg+++++ + +++++ +++ tr+ C+ak++ + + +kw+vtk+e+ HnH+l Aradu.91DIX 81 DFYRNYAEVHDFVARLDEKGQD-FSGNLNMRQMVCNREGTHRKKYLEmENRKKDHKPITRVMCQAKIRFHYDLiLQKWRVTKFEETHNHDLI 171 6************999987776.9999*************99998885677778999***************99****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.1E-15 | 81 | 172 | IPR004330 | FAR1 DNA binding domain |
SuperFamily | SSF57756 | 9.63E-5 | 318 | 346 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MNIDDNKNLK ESIECNELCF GYDNSSDKEE EDLITNEGKF SESMEMSNYS YKIQEVEKKL 60 NELSYDDMWG IEFDNVDQCC DFYRNYAEVH DFVARLDEKG QDFSGNLNMR QMVCNREGTH 120 RKKYLEMENR KKDHKPITRV MCQAKIRFHY DLILQKWRVT KFEETHNHDL IPPKYIQFVP 180 AYRTMTDADK AQADSLHFYG YRTNELLSDF KSLFTTPVLT TCLQDIEKQA ADIFTRSMFK 240 EVRCEIEEAG KLNVVTHSVS NNEVKSASKN RDDFMEIRDD IFGLIQKLKK RRDPDSNVLS 300 NACMVGDPTV VKTKGVLRQN RWAIKSRKCS HCIRRGHTIR RCPELYSRDV LHTGHHQSSD 360 ELNDEKDTRV DDTSLKSKKY KQIKVF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.91DIX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015961394.1 | 1e-143 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445CDV2 | 1e-137 | A0A445CDV2_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23548 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 6e-15 | FAR1-related sequence 11 |