PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.863B0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 567aa MW: 61850.5 Da PI: 7.0471 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115 | 4.8e-36 | 244 | 342 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C+lapyfpa++p+ f++vh++FGasnv k+l++lp+++re+a++sl++eAear+ dPvyG++ + lq+ l+q a la +k Aradu.863B0 244 PCAACKFLRRKCTPECILAPYFPANNPQLFEYVHRVFGASNVGKILNELPPSQREEAVKSLAFEAEARLCDPVYGCTLQVCILQKILRQRCALLANAK 341 7***********************************************************************************99999888887776 PP DUF260 99 e 99 + Aradu.863B0 342 R 342 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56112 | 5.26E-47 | 4 | 156 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 1.1E-35 | 5 | 110 | No hit | No description |
Pfam | PF00069 | 5.8E-39 | 7 | 154 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 27.34 | 7 | 265 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 1.8E-33 | 7 | 265 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 2.2E-15 | 111 | 158 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 122 | 134 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS50891 | 24.632 | 243 | 344 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-35 | 244 | 338 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 567 aa Download sequence Send to blast |
MHDSDRYELV RDIGSGNLGI ARLMQDKQTK ELVAVKYIER GDKIDENVKR EIINHRSLRH 60 PNIVRFKEVI LTPTHLAIVM EYASGGELFE RICNAGRFSE DEARFFFQQF ICGVSYCHAT 120 QVCHRDLKLE NTLLDGSPAP RLKICDFGYS KKPPPPTEQP ATIAAPTASL SSLSSAPLLS 180 PLLAAGNLRL SVFAAAPANL PLASPPPCRR RLLLASSDQL EVNRIQLYAE KNKKERRMSS 240 TTTPCAACKF LRRKCTPECI LAPYFPANNP QLFEYVHRVF GASNVGKILN ELPPSQREEA 300 VKSLAFEAEA RLCDPVYGCT LQVCILQKIL RQRCALLANA KRELSAYINP QAIQGPFNLQ 360 EKPLSSPAAH VGPPCSPNVV QYSPILGPSY GPDVVRSSAH LGLSDGPDDA PFFMPAMQHN 420 GSLGGGAADP QLDPGQQELL EAQQLAASAA IREQQQAIMM RNYVQQQQQE YLRHNVAAGI 480 EPVAAAAAYS GDVSGSGVFG HMGAPSGGQG GEMAPCMGLE TFDSGGSYHR QLQQPQHEVG 540 ENFVGLATQH HYPLGGQLLL PSEQQEL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ujg_A | 2e-99 | 1 | 166 | 14 | 179 | Serine/threonine-protein kinase SRK2E |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.863B0 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020985221.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_020985222.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_020985224.1 | 0.0 | LOB domain-containing protein 36-like | ||||
TrEMBL | A0A445AQ22 | 0.0 | A0A445AQ22_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF29057 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 9e-45 | ASYMMETRIC LEAVES 2-like 1 |