PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.842XP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 441aa    MW: 51752.6 Da    PI: 5.0779
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.842XPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.54.4e-18142219177
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwe 77 
                  +fYn+YA++ GFs rk++s+ks r g  + ++fvC +eg+r +++    + +r+++ etr+gC a+++++ +  +g+w+
  Aradu.842XP 142 EFYNRYARTRGFSARKNRSRKS-RAGALKLKNFVCHREGFRLQNNYGiGNLKRKPTHETRCGCSAMMEIRVDApSGRWY 219
                  6********************9.7777**************999888778999******************99988885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577119No hitNo description
PfamPF031015.2E-15142219IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.262300348IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-4323350IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRKEARPDLI TFVGVLAACS RGLLLNEGQA FYDMMMRDYG INPTVQHYTC MEVVGQEFSH  60
EGVNSEHTSY DQYEQEEEKY EEVDVDYMDE NDTSVEPMFD YHGFDEGYNI DSLEDIGMIE  120
FWNIRDEDVC HFHFSDVDIA FEFYNRYART RGFSARKNRS RKSRAGALKL KNFVCHREGF  180
RLQNNYGIGN LKRKPTHETR CGCSAMMEIR VDAPSGRWYN LVEFIQHFNR CVDHMRWKEV  240
QADLASVNGR PSLQTYFQQL ERSAVNVYTL SIFHMFQPIL VRAASMKVIN MRQTGSYVIY  300
SVDLDRMSNE MWCVFCCDNE MEFNCSCMRM ESLGIPCEHI VCVLVHEDIE ELPRSLVLPR  360
WTKTAKVSFQ NARGLHWDSL MLSQYGCLMD WFRQLANFAC RDNERFIFTR EMAMNLLKQF  420
KEEDAAQKEL VNDADIVRDG V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.842XP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948985.11e-158protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XLT91e-146A0A444XLT9_ARAHY; Uncharacterized protein
TrEMBLA0A444Z5471e-146A0A444Z547_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1401926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.22e-16FAR1-related sequence 3