PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.72K9J | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 593aa MW: 62985 Da PI: 8.6309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3.1e-05 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Aradu.72K9J 32 FICEVCNKGFQREQNLQLHRRGH 54 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00072 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Aradu.72K9J 108 WKCDKCSKKYAVQSDWKAHSKTC 130 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.6E-6 | 31 | 54 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.91E-7 | 31 | 54 | No hit | No description |
Pfam | PF12171 | 2.9E-5 | 32 | 54 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 32 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 73 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-5 | 96 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.91E-7 | 103 | 128 | No hit | No description |
SMART | SM00355 | 150 | 108 | 128 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MRVIQNSDSV LEDPDAEVIA LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL 60 KQKTTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ 120 SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARQPPNL NNAIGTHLYG 180 STNNNMALGL SQVGMGMGVG VGVGVGVGVG VGPQQIPTAM QESSTDLLRL SGRTGQLDHH 240 MLPPPPSSFR TSHHQPFFMN DHQNFHGHQG LMHLSDLNNN NNNSMDNNSP SGGGGGANNN 300 SSNNNNNNNN NSNLFNLPFL SSNSTNSSNN SFSDQHGNNN NNNEGNNSFF TGAGGSAIMH 360 QTTSSTAPSL FSNSLETNNN NNNSGSISHM SATALLQKAA QMGATTSNST ASLLKSFGVT 420 STTSAAAKPP HDHHHHLRAA TMVSNAAAAA SYGSIFGSGS EQGNLQDLMN SFATVASAGH 480 SSSMFESGGG SSVGLMAGFD HAYDHSSNSR EHKLHGVSIG GGSDGLTRDF LGVGQMVRTM 540 SSGGGGGGGG VSRREQQQQH CFTLSSMEAE RNSNAAPSGQ SFGSSGGGGG NFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-34 | 104 | 172 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 2e-34 | 104 | 172 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.72K9J |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-161 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941993.1 | 0.0 | protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A445BEB0 | 0.0 | A0A445BEB0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G42660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-96 | indeterminate(ID)-domain 5 |