PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.62EBL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 308aa    MW: 35080.3 Da    PI: 6.9628
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.62EBLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.34.4e-22151239189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +fY++YAk+ GF  r+sks+k    +  ++++fvC ++g+r+ +     ++++r+raet++gC a+++v++++ +++w+v+++++eHnH++
  Aradu.62EBL 151 EFYQAYAKHHGFGGRRSKSEKY--RQVRIRQEFVCHRQGFRSVKFYLiLNRQKRPRAETQCGCPARMHVSMDDeSEHWYVAHVSNEHNHPV 239
                  6*****************9999..45569*************9877678999********************99***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-20151240IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVASALSSPA RPKSTAHTPP KIATTHQTRF DRLMASLSPS MERSVVRDED ILASVHLADE  60
VKLYDGADHR VGSVEGKGFA GMESDEGRWQ QWDVVELEDN LDGVGGMHGN FADDDLYAVD  120
SGESISSIDF ANLSKKEVCW FNFTDVNITF EFYQAYAKHH GFGGRRSKSE KYRQVRIRQE  180
FVCHRQGFRS VKFYLILNRQ KRPRAETQCG CPARMHVSMD DESEHWYVAH VSNEHNHPVL  240
ELKFSSMLPS HRRMNEADIE QMNDMHKGDI AVLRIHNFMA SLAGGYYNVP YTTSNMYNVN  300
RINKGRVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.62EBL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020990083.11e-143protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445C7Q31e-134A0A445C7Q3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1661226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.15e-19FAR1-related sequence 10