PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.60U13
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 374aa    MW: 41646.1 Da    PI: 8.6539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.60U13genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.38.2e-55331601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeel+++yL +k+++++++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+l++ ++
  Aradu.60U13  33 LPPGFRFHPTDEELITCYLINKISDSNFSG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSvTS 129
                  79*************************999.89***************99999****************************************99899 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  el+g+kktLvfykgrap+gek++Wvmheyr+
  Aradu.60U13 130 ELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 160
                  99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6330182IPR003441NAC domain
PROSITE profilePS5100560.14333182IPR003441NAC domain
PfamPF023656.1E-2834160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQKEKESITT NKEGTNKKEI EIMEGCNGKE ETLPPGFRFH PTDEELITCY LINKISDSNF  60
SGRAITDVDL NKCEPWELPG KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD  120
KEILNSVTSE LIGMKKTLVF YKGRAPRGEK SNWVMHEYRI HSKSTFRTTK QDEWVVCRVF  180
QKSAGAKKYP SSNHASRAMN PFNLEIGHHN IVPPPPMMQL GDPAAAHFLY GRNYMNTAEL  240
AEVARVLRVG TGSTSTNLPG MQPQINYPVA ASPGIGFTIS GLNLNLGGGG GETVVATTQP  300
VLRPMQPTPP SQTLGMVPHH QVHHDVSSNM ISTNSLGAEN VGYVNEISNT NGGHGNRFMG  360
MDHCMDLDNY WPSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-573218816171NO APICAL MERISTEM PROTEIN
1ut4_B4e-573218816171NO APICAL MERISTEM PROTEIN
1ut7_A4e-573218816171NO APICAL MERISTEM PROTEIN
1ut7_B4e-573218816171NO APICAL MERISTEM PROTEIN
3swm_A5e-573218819174NAC domain-containing protein 19
3swm_B5e-573218819174NAC domain-containing protein 19
3swm_C5e-573218819174NAC domain-containing protein 19
3swm_D5e-573218819174NAC domain-containing protein 19
3swp_A5e-573218819174NAC domain-containing protein 19
3swp_B5e-573218819174NAC domain-containing protein 19
3swp_C5e-573218819174NAC domain-containing protein 19
3swp_D5e-573218819174NAC domain-containing protein 19
4dul_A4e-573218816171NAC domain-containing protein 19
4dul_B4e-573218816171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.60U13
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945731.10.0protein CUP-SHAPED COTYLEDON 3 isoform X1
TrEMBLA0A445B4600.0A0A445B460_ARAHY; Uncharacterized protein
STRINGGLYMA04G08320.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-107NAC domain containing protein 38