PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.597SK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 197aa MW: 22388.8 Da PI: 7.8742 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.4 | 5.6e-14 | 99 | 157 | 34 | 91 |
FAR1 34 vCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 C g++ e+ ++ +++r+++++tr+gC a++++k + +gkw v++++ +HnHel p Aradu.597SK 99 FCDTTGEEIEKLERGDRKREQKVVTRCGCLAEMRIKPNGeTGKWFVSRFVDDHNHELLP 157 4888888888888899*********************999****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-11 | 99 | 157 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVTLRLHMEV LRLVVAGESI GKIVYVRKRS ERRGSGWLKC WVLEEVLVIK MEEDGYDGDS 60 FNQALGNFSK SSEAGLLSAE DVLKLEFGCP KEAILSKGFC DTTGEEIEKL ERGDRKREQK 120 VVTRCGCLAE MRIKPNGETG KWFVSRFVDD HNHELLPKKF VEYLPSYRKV SDVDIAHMDS 180 LRQVGISIPK IYKSFAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.597SK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997365.1 | 3e-53 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444YA33 | 1e-53 | A0A444YA33_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9185 | 2 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 1e-13 | FAR1-related sequence 11 |