PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.58D1A

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 193aa MW: 22762.2 Da PI: 10.7377

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.58D1A	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.5	8.3e-43	19	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Pt+eel+ +yLk kv + +l++ ++i+e+++++++PwdLp e y Fs+++ ky++g+r nr+tksgyWkatg+dk+++s+ Aradu.58D1A 19 LPPGFRFQPTEEELLFQYLKCKVFSFQLPA-SIIPEINVCNYDPWDLP--------ERYLFSSKEVKYRNGNRMNRITKSGYWKATGSDKRIISTssn 107 79**************************.89**********9........67*******************************99777 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg++ktLvfy+g++p+g++t+W+m eyrl Aradu.58D1A 108 nnnNNNIVGIRKTLVFYHGKSPNGSRTHWIMREYRL 143 6655666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-51	17	169	IPR003441	NAC domain
PROSITE profile	PS51005	46.693	19	169	IPR003441	NAC domain
Pfam	PF02365	3.1E-22	20	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MMSKKMRFVK KNKNGVRLLP PGFRFQPTEE ELLFQYLKCK VFSFQLPASI IPEINVCNYD 60 PWDLPERYLF SSKEVKYRNG NRMNRITKSG YWKATGSDKR IISTSSNNNN NNNIVGIRKT 120 LVFYHGKSPN GSRTHWIMRE YRLVTTPSNS SQKYVEDLGN WVLCRIFKKK RSIESQHHMV 180 KNKINNNVVE SFQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-46	19	174	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-46	19	174	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-46	19	174	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-46	19	174	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-46	19	174	20	173	NAC domain-containing protein 19
3swm_B	4e-46	19	174	20	173	NAC domain-containing protein 19
3swm_C	4e-46	19	174	20	173	NAC domain-containing protein 19
3swm_D	4e-46	19	174	20	173	NAC domain-containing protein 19
3swp_A	4e-46	19	174	20	173	NAC domain-containing protein 19
3swp_B	4e-46	19	174	20	173	NAC domain-containing protein 19
3swp_C	4e-46	19	174	20	173	NAC domain-containing protein 19
3swp_D	4e-46	19	174	20	173	NAC domain-containing protein 19
4dul_A	4e-46	19	174	17	170	NAC domain-containing protein 19
4dul_B	4e-46	19	174	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.58D1A

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937760.1	1e-124	NAC domain-containing protein 83 isoform X1
Refseq	XP_025616054.1	1e-124	NAC domain-containing protein 83 isoform X1
Swissprot	Q9FY93	1e-62	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A444XWL6	1e-122	A0A444XWL6_ARAHY; Uncharacterized protein
STRING	GLYMA05G38380.1	5e-83	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-63	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]