PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.50M8D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 701aa MW: 76205.7 Da PI: 6.5605 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1.1e-06 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Aradu.50M8D 277 PCPEFRK-GSCSKGDLCEYAHG 297 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 8.9E-17 | 30 | 180 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.12E-14 | 34 | 159 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.2E-8 | 70 | 143 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.034 | 75 | 105 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 16.733 | 75 | 150 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.26E-13 | 77 | 155 | No hit | No description |
PROSITE profile | PS50088 | 12.129 | 110 | 145 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.018 | 110 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.1E-4 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.568 | 277 | 299 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-4 | 277 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 305 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 307 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 701 aa Download sequence Send to blast |
MCSGSKRKPT QTGLVMEDDY GREEGQHQKI SALLELAAAD DLIGFKDAVE KEGCDVDEAG 60 SWFGRRLGSK KVGYEERTPL MVAAMFGSLR VLAYILGTGC VDVNRASGSD GATAIHCAVA 120 GGSAASLEVV KLLLESSADV STVDSNGNRP CDLVVSGANS IPNSRKRMLQ AMLEGTVGTD 180 KTLEDVVGQI EEQQRENVVN TPRVLKDGAE RKDYPVDHSL PDIKNGIYGT DEFRMYTFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCSKGD LCEYAHGIFE 300 CWLHPAQYRT RLCKDEGACT RRVCFFAHKP EELRPLYAST GSAMPSPRSY SSGSSLDMGP 360 VSPITLGSPS VMIPPASTPP LTPSGSSSPL SGSMWQTQSN IPTLQLPRSS RLKTALAASD 420 INSDTELLML MMDEMTGLSS PSGWRNSLTN NNPSYHYSLG DRAADLNRLS GVMPTNLDDT 480 FGSVDPSILS KFNGISFDAA GPQLHLPTGL QMRQNMNQQL RGYSSGLPSP KVIGSPKSRV 540 DPSGEPTALA FNPRLAAFSQ RSQSFIERSM GNRHSEVPSL ATSVAAKPSL AYSHWGSHDG 600 KLDWPMQGEE LNKLRKSASF GFRSSSNIPS PRAATRMSAA KVDVPDVSWV SSLVKDAPAQ 660 PEPGQFSAED QQQLQCHLNN GTDVIPAWLE QMYIDQEQMV A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.50M8D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932016.1 | 0.0 | zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A444YAV0 | 0.0 | A0A444YAV0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007142205.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-170 | C3H family protein |